Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   V1502_RS18360 Genome accession   NZ_CP143546
Coordinates   3727444..3728124 (-) Length   226 a.a.
NCBI ID   WP_409254392.1    Uniprot ID   -
Organism   Bacillus sp. SCS-153A     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3722444..3733124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1502_RS18345 (V1502_18345) - 3723139..3724224 (-) 1086 WP_409254390.1 methyl-accepting chemotaxis protein -
  V1502_RS18350 (V1502_18350) - 3724723..3725673 (-) 951 WP_409254391.1 methyl-accepting chemotaxis protein -
  V1502_RS18355 (V1502_18355) - 3725674..3726762 (-) 1089 Protein_3552 cache and HAMP domain-containing protein -
  V1502_RS18360 (V1502_18360) degU 3727444..3728124 (-) 681 WP_409254392.1 response regulator Regulator
  V1502_RS18365 (V1502_18365) degS 3728153..3729295 (-) 1143 WP_409252032.1 sensor histidine kinase Regulator
  V1502_RS18370 (V1502_18370) - 3729787..3730419 (+) 633 WP_409252033.1 YigZ family protein -
  V1502_RS18375 (V1502_18375) - 3730506..3731474 (+) 969 WP_409252034.1 LCP family protein -
  V1502_RS18380 (V1502_18380) - 3731519..3732589 (-) 1071 WP_409252035.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25389.00 Da        Isoelectric Point: 5.8556

>NTDB_id=929577 V1502_RS18360 WP_409254392.1 3727444..3728124(-) (degU) [Bacillus sp. SCS-153A]
MMTTNIVIIDDHQLFREGVKRILEFEPTFNVLAEGDDGSEAIELVEKHNPDVVLMDINMPEKNGVEATQELVKKYPDTKV
IILSIHDDENYVSHALKTGALGYLLKEMDSEALIEAVKVVAAGGSYIHPKVTHNLISDYRRLANNQDTGGFKQTEVRRPL
HLLTRRECEVLQMLADGKSNRGIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVTGIKNGWVEVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=929577 V1502_RS18360 WP_409254392.1 3727444..3728124(-) (degU) [Bacillus sp. SCS-153A]
ATTATGACAACAAATATTGTCATTATAGACGATCATCAGTTATTTCGAGAAGGGGTAAAACGCATTTTAGAATTTGAGCC
AACTTTTAATGTATTAGCAGAGGGAGATGACGGGTCAGAGGCTATCGAGCTCGTTGAAAAACACAATCCTGATGTGGTAT
TGATGGATATCAACATGCCTGAAAAAAATGGCGTGGAGGCTACACAGGAGCTTGTGAAAAAATACCCTGACACAAAGGTC
ATCATTCTGTCGATACATGACGACGAAAACTATGTGAGTCACGCGTTAAAAACGGGTGCATTAGGCTATCTACTGAAGGA
AATGGACTCCGAAGCATTGATTGAGGCGGTTAAGGTAGTGGCTGCCGGCGGATCTTACATCCACCCTAAAGTCACTCACA
ATTTGATCAGTGATTATCGTCGTCTGGCAAATAATCAGGATACAGGCGGTTTCAAGCAGACGGAAGTAAGACGCCCGCTG
CACCTATTGACCCGCCGTGAGTGCGAAGTCCTGCAGATGCTTGCAGATGGCAAGAGCAACCGTGGAATCGGTGAAGCTCT
GTATATCAGTGAGAAGACCGTTAAGAACCACGTAAGTAACATCTTACAAAAAATGAACGTAAACGACCGTACCCAAGCTG
TTGTGACAGGAATCAAAAACGGCTGGGTGGAAGTTCGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(162-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

76.419

100

0.774