Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   V1502_RS14475 Genome accession   NZ_CP143546
Coordinates   2914071..2915147 (-) Length   358 a.a.
NCBI ID   WP_409251343.1    Uniprot ID   -
Organism   Bacillus sp. SCS-153A     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2909071..2920147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1502_RS14430 (V1502_14430) - 2909468..2910253 (+) 786 WP_409251334.1 YqhG family protein -
  V1502_RS14435 (V1502_14435) - 2910465..2910641 (-) 177 WP_409251335.1 YqzE family protein -
  V1502_RS14440 (V1502_14440) - 2910664..2911182 (-) 519 WP_409251336.1 shikimate kinase -
  V1502_RS14445 (V1502_14445) comGG 2911191..2911544 (-) 354 WP_409251337.1 competence type IV pilus minor pilin ComGG -
  V1502_RS14450 (V1502_14450) comGF 2911534..2911950 (-) 417 WP_409251338.1 competence type IV pilus minor pilin ComGF -
  V1502_RS14455 (V1502_14455) - 2911947..2912276 (-) 330 WP_409251339.1 hypothetical protein -
  V1502_RS14460 (V1502_14460) comGD 2912263..2912709 (-) 447 WP_409251340.1 competence type IV pilus minor pilin ComGD -
  V1502_RS14465 (V1502_14465) comGC 2912699..2913007 (-) 309 WP_409251341.1 competence type IV pilus major pilin ComGC -
  V1502_RS14470 (V1502_14470) comGB 2913049..2914086 (-) 1038 WP_409251342.1 competence type IV pilus assembly protein ComGB -
  V1502_RS14475 (V1502_14475) comGA 2914071..2915147 (-) 1077 WP_409251343.1 competence type IV pilus ATPase ComGA Machinery gene
  V1502_RS14485 (V1502_14485) - 2915388..2915543 (+) 156 WP_409251344.1 hypothetical protein -
  V1502_RS14490 (V1502_14490) - 2915567..2915947 (-) 381 WP_409251345.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  V1502_RS14495 (V1502_14495) - 2916790..2917032 (+) 243 WP_006837891.1 DUF2626 domain-containing protein -
  V1502_RS14500 (V1502_14500) - 2917178..2917813 (-) 636 WP_409251346.1 MBL fold metallo-hydrolase -
  V1502_RS14505 (V1502_14505) - 2918628..2918801 (+) 174 WP_409251347.1 DUF2759 domain-containing protein -
  V1502_RS14510 (V1502_14510) - 2918881..2919189 (-) 309 WP_409251348.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 39871.27 Da        Isoelectric Point: 8.5697

>NTDB_id=929565 V1502_RS14475 WP_409251343.1 2914071..2915147(-) (comGA) [Bacillus sp. SCS-153A]
MVQLIFYSIEALADSILKKAVTKNATDIHLFPRKADYLMQHRRNGILTPNVSIPVPEGERLISHFKFMASMDIGEKRKPQ
SGSFTFHLGNKPLDLRVSTLPTTNLKESLVIRILPHQKSLPVEKLSLYPSSARKLLALLMNSHGLMVFTGPTGSGKTTTL
YSLVEHCSSVMQRNVVTLEDPVEKYNDSLVQVQVNEKAGVTYAAGLRAILRHDPDIIMVGEIRDEETAEIAIRAALSGHL
VLSTLHTKDAKGAVYRLMELGIEWHEIHQSLIAVSAQRLINLTCPFCGETCSELCPRNQGENRASLYEILSGKALGEVLK
EAKGDLATYQYPTLTNLLQKGYALGYIPLKELNRWKLE

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=929565 V1502_RS14475 WP_409251343.1 2914071..2915147(-) (comGA) [Bacillus sp. SCS-153A]
GTGGTGCAGCTCATATTTTATTCTATTGAAGCCTTAGCTGATTCAATTCTGAAAAAAGCAGTCACAAAAAACGCAACGGA
TATTCATTTGTTTCCCCGGAAAGCTGATTACCTCATGCAGCATCGAAGAAACGGAATCCTCACACCGAATGTTAGCATTC
CGGTACCCGAAGGAGAAAGACTGATATCCCATTTTAAATTCATGGCCTCCATGGATATAGGGGAAAAGCGAAAACCTCAA
AGCGGATCCTTCACCTTCCACCTCGGAAATAAACCACTTGATCTTCGTGTCTCTACATTGCCTACCACCAACCTGAAAGA
AAGTCTCGTCATTAGGATACTTCCTCATCAGAAAAGCCTTCCTGTAGAAAAGTTGTCTCTATATCCCTCTTCAGCCCGTA
AACTTCTTGCACTGTTAATGAACTCCCACGGATTGATGGTGTTTACCGGTCCGACGGGGAGTGGAAAAACCACAACTCTT
TATTCCCTTGTAGAACATTGTTCTTCGGTTATGCAAAGAAATGTTGTAACACTGGAAGATCCCGTTGAAAAATATAATGA
TTCCCTGGTACAAGTCCAAGTAAATGAAAAAGCAGGAGTCACATATGCGGCCGGCCTGCGTGCGATCTTAAGACATGATC
CCGATATCATCATGGTCGGGGAGATTCGTGATGAAGAAACAGCGGAGATAGCGATCAGGGCAGCGTTATCTGGGCATTTA
GTGTTGTCAACGTTGCATACCAAAGATGCAAAGGGAGCGGTATACCGATTAATGGAATTAGGCATTGAGTGGCATGAGAT
TCATCAAAGCCTGATTGCTGTTTCTGCTCAGCGGCTCATTAATCTGACTTGTCCATTCTGCGGCGAAACTTGTTCTGAAT
TATGTCCGAGAAATCAGGGAGAGAACAGAGCTTCTTTATACGAAATTTTGAGCGGGAAAGCATTAGGAGAGGTACTGAAG
GAAGCTAAAGGAGATTTGGCAACTTATCAATATCCCACCCTGACGAATTTGCTTCAGAAGGGATATGCATTAGGATATAT
TCCGCTTAAGGAACTGAACCGATGGAAATTAGAATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(16-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

54.155

97.486

0.528
  pilB Glaesserella parasuis strain SC1401

44.337

86.313

0.383
  pilB Haemophilus influenzae 86-028NP

42.122

86.872

0.366