Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   V1502_RS14260 Genome accession   NZ_CP143546
Coordinates   2874178..2875881 (-) Length   567 a.a.
NCBI ID   WP_409251306.1    Uniprot ID   -
Organism   Bacillus sp. SCS-153A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2869178..2880881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1502_RS14240 (V1502_14240) - 2869447..2869683 (+) 237 WP_409251302.1 DUF2627 domain-containing protein -
  V1502_RS14245 (V1502_14245) - 2869731..2870462 (-) 732 WP_409251303.1 glycerophosphodiester phosphodiesterase -
  V1502_RS14250 (V1502_14250) spo0A 2870633..2871415 (-) 783 WP_409251304.1 sporulation transcription factor Spo0A Regulator
  V1502_RS14255 (V1502_14255) spoIVB 2872586..2873872 (-) 1287 WP_409251305.1 SpoIVB peptidase -
  V1502_RS14260 (V1502_14260) recN 2874178..2875881 (-) 1704 WP_409251306.1 DNA repair protein RecN Machinery gene
  V1502_RS14265 (V1502_14265) ahrC 2875898..2876347 (-) 450 WP_044022708.1 transcriptional regulator AhrC/ArgR -
  V1502_RS14270 (V1502_14270) - 2876855..2877682 (-) 828 WP_409251307.1 TlyA family RNA methyltransferase -
  V1502_RS14275 (V1502_14275) dxs 2877685..2879577 (-) 1893 WP_409251308.1 1-deoxy-D-xylulose-5-phosphate synthase -
  V1502_RS14280 (V1502_14280) - 2879599..2880219 (-) 621 WP_409254355.1 hypothetical protein -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 63802.46 Da        Isoelectric Point: 4.9721

>NTDB_id=929564 V1502_RS14260 WP_409251306.1 2874178..2875881(-) (recN) [Bacillus sp. SCS-153A]
MLQELSIKNFAIIDELTVSIEEGLTVLTGETGAGKSIIIDAVHLLVGGRGSSEFVRHGEKKAEIEGLFTLENENHPCYKK
AAEFGIEIEEGMIILRRDISSLGKSVCRINGKLVTIATLREVGSTLIDIHGQHEHQELMNETLHLTLLDQFASKELKNSL
QNYKDVFKEYESVQSRLKKYNENEQEMAHRLDLIQFQLSEIEKAELQPGEDEALLEEKNKLMNFEKLFESLQNCYNSIQG
EGRGLDWTGLAMSHIEGAAGVDSKYDSLMESISNSYYLLEEAAGTVRSELDELEFEPDRLNTIEGRLNEINSLKRKYGST
IEEILEYSAKIEEEIETVTNKDALIHELENKLKSLEKDLYLEAEQLSGIRKKAAKKLTARIHEQLKELYMDKTTFEVRFL
QEPSKSNSFKYRKDGADQIEFYISTNPGEPLKPLSKVASGGELSRVMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQAI
AEKIYQVSVNSQVMCISHLPQVAAMADSHLYIAKKSAGGRTSTSVTALKQEEKIREIGRMISGVEFTELTREHAKELLNL
AESIKNK

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=929564 V1502_RS14260 WP_409251306.1 2874178..2875881(-) (recN) [Bacillus sp. SCS-153A]
TTGTTACAGGAACTTTCAATAAAGAATTTCGCAATCATCGACGAACTGACCGTCTCTATTGAAGAGGGGCTGACTGTCCT
TACAGGTGAAACGGGCGCAGGGAAATCAATTATCATTGATGCCGTCCATTTACTTGTAGGAGGCAGGGGATCCTCCGAAT
TTGTAAGACATGGCGAGAAGAAGGCTGAAATAGAAGGCCTGTTTACCCTGGAAAACGAAAACCATCCCTGTTATAAAAAA
GCTGCAGAATTTGGGATTGAGATTGAAGAAGGGATGATAATCCTGAGAAGGGACATCTCCAGTCTGGGGAAAAGTGTATG
CCGGATCAACGGAAAGCTGGTTACCATTGCAACATTAAGGGAAGTGGGCTCAACCCTAATCGACATTCACGGCCAGCATG
AACATCAGGAGTTGATGAATGAAACACTTCATCTTACATTGCTTGACCAGTTTGCTTCAAAAGAATTGAAAAATTCCTTG
CAAAATTATAAAGATGTCTTCAAGGAATATGAGTCTGTTCAGAGCAGATTGAAAAAGTATAATGAAAATGAGCAGGAAAT
GGCCCATAGGCTCGATTTAATTCAATTTCAGTTATCAGAAATTGAAAAAGCGGAACTCCAACCAGGTGAAGATGAAGCAC
TCCTGGAAGAAAAGAACAAATTGATGAATTTTGAAAAATTGTTCGAGTCGCTGCAAAATTGCTATAACAGTATACAGGGA
GAAGGTCGCGGCTTGGATTGGACCGGCCTGGCGATGAGTCATATTGAAGGAGCTGCGGGTGTGGATTCGAAATATGACAG
TCTCATGGAGTCGATCTCTAACAGTTATTATTTGCTTGAGGAGGCTGCAGGTACGGTACGTTCGGAATTGGATGAGCTTG
AATTCGAACCCGACAGGCTTAATACCATTGAAGGCCGCCTGAATGAAATCAATTCATTAAAAAGAAAATATGGCTCGACT
ATTGAAGAAATTCTGGAGTACAGCGCGAAAATAGAAGAGGAAATCGAAACGGTCACAAATAAAGATGCTCTTATCCATGA
GCTTGAGAATAAACTTAAGTCGTTAGAAAAAGATTTATACTTAGAGGCGGAACAGCTTTCAGGCATTCGAAAAAAAGCGG
CGAAAAAGCTGACTGCCCGCATACATGAGCAGCTGAAGGAGCTCTATATGGATAAAACGACTTTTGAAGTCCGTTTTTTA
CAAGAGCCTTCCAAGAGCAATTCATTTAAGTATAGAAAAGATGGAGCGGACCAGATTGAATTTTATATTTCCACAAATCC
CGGCGAACCATTGAAGCCTCTGTCCAAGGTTGCTTCCGGCGGGGAGCTTTCAAGGGTGATGCTGGCACTGAAGACAATCT
TTTCAAAACACCAAGGCATCACCTCCATAATCTTTGATGAGGTGGATACAGGTGTGAGCGGCCGAGTTGCTCAAGCGATT
GCGGAAAAGATTTATCAGGTTTCCGTCAATTCGCAGGTCATGTGTATTTCTCATCTCCCTCAGGTTGCCGCCATGGCCGA
TTCACATCTATATATAGCCAAAAAGTCAGCGGGCGGCCGGACAAGCACATCCGTCACAGCCTTGAAGCAAGAAGAAAAAA
TACGTGAAATCGGCAGAATGATTTCAGGTGTAGAGTTTACAGAGCTGACAAGGGAGCATGCAAAAGAATTGCTAAACCTT
GCAGAATCCATTAAAAATAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60

100

0.608