Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   V1502_RS14250 Genome accession   NZ_CP143546
Coordinates   2870633..2871415 (-) Length   260 a.a.
NCBI ID   WP_409251304.1    Uniprot ID   -
Organism   Bacillus sp. SCS-153A     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2865633..2876415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1502_RS14230 (V1502_14230) yqiS 2866209..2867114 (-) 906 WP_409254354.1 phosphate butyryltransferase -
  V1502_RS14235 (V1502_14235) - 2867236..2869314 (-) 2079 WP_409251301.1 sigma 54-interacting transcriptional regulator -
  V1502_RS14240 (V1502_14240) - 2869447..2869683 (+) 237 WP_409251302.1 DUF2627 domain-containing protein -
  V1502_RS14245 (V1502_14245) - 2869731..2870462 (-) 732 WP_409251303.1 glycerophosphodiester phosphodiesterase -
  V1502_RS14250 (V1502_14250) spo0A 2870633..2871415 (-) 783 WP_409251304.1 sporulation transcription factor Spo0A Regulator
  V1502_RS14255 (V1502_14255) spoIVB 2872586..2873872 (-) 1287 WP_409251305.1 SpoIVB peptidase -
  V1502_RS14260 (V1502_14260) recN 2874178..2875881 (-) 1704 WP_409251306.1 DNA repair protein RecN Machinery gene
  V1502_RS14265 (V1502_14265) ahrC 2875898..2876347 (-) 450 WP_044022708.1 transcriptional regulator AhrC/ArgR -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 28925.37 Da        Isoelectric Point: 6.3042

>NTDB_id=929563 V1502_RS14250 WP_409251304.1 2870633..2871415(-) (spo0A) [Bacillus sp. SCS-153A]
MNSIKVCVVDDNRELVSLLEEYISSQNDMEVVGVAHNGQECLELLDEVEPDVIVLDIIMPHLDGLAVLERIRERSVIPNV
IMLTAFGQEDVTKKAVELGASYFILKPFDMENLVSHIRQVSGKSSPIFKKSTSHSRSAAESKPKNLDASITSIIHEIGVP
AHIKGYLYLREAISMVYKDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISNLFGYTVSMSKAKP
TNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 783 bp        

>NTDB_id=929563 V1502_RS14250 WP_409251304.1 2870633..2871415(-) (spo0A) [Bacillus sp. SCS-153A]
GTGAATTCAATTAAAGTGTGTGTAGTAGATGATAATCGTGAGTTAGTATCTTTACTGGAGGAATATATTTCATCCCAAAA
TGACATGGAAGTTGTGGGGGTCGCTCATAACGGCCAGGAGTGCCTTGAACTTCTTGATGAGGTGGAACCTGATGTCATTG
TATTGGACATCATCATGCCTCACCTAGATGGTCTTGCTGTGCTTGAGCGCATCAGGGAACGTTCTGTCATTCCAAATGTA
ATTATGTTGACAGCTTTCGGCCAGGAAGATGTGACGAAGAAAGCGGTGGAATTGGGTGCTTCCTATTTTATATTGAAACC
ATTTGATATGGAAAATCTGGTCAGTCATATCCGTCAAGTAAGCGGAAAATCAAGTCCGATATTTAAAAAATCCACATCAC
ATTCACGATCTGCTGCAGAATCAAAACCTAAAAATCTTGATGCCAGCATTACAAGCATCATTCATGAGATTGGTGTGCCT
GCTCACATTAAAGGCTACCTTTATTTAAGAGAAGCAATCTCGATGGTCTATAAAGATATTGAGCTGCTTGGGTCCATTAC
AAAAGTTCTTTATCCGGACATCGCCAAAAAGTTCAATACCACTGCAAGCCGTGTGGAACGTGCCATCCGACATGCGATAG
AAGTCGCCTGGAGCCGTGGGAACATTGACTCAATTTCGAACCTATTCGGATATACTGTCAGTATGAGCAAAGCCAAACCG
ACAAATAGTGAATTTATCGCGATGGTTGCGGATAAGCTTCGATTGGAACATAAAGCTTCTTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(150-253)

Response regulator receiver domain (Response_reg)

(6-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

81.648

100

0.838