Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   V1502_RS13390 Genome accession   NZ_CP143546
Coordinates   2695534..2696139 (+) Length   201 a.a.
NCBI ID   WP_409251145.1    Uniprot ID   -
Organism   Bacillus sp. SCS-153A     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2690534..2701139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1502_RS13360 (V1502_13360) - 2691080..2691523 (+) 444 WP_409251139.1 Hsp20/alpha crystallin family protein -
  V1502_RS13365 (V1502_13365) - 2691857..2692327 (-) 471 WP_409251140.1 YppG family protein -
  V1502_RS13370 (V1502_13370) yppF 2692569..2692760 (+) 192 WP_409251141.1 YppF family protein -
  V1502_RS13375 (V1502_13375) - 2692890..2693246 (-) 357 WP_409251142.1 YppE family protein -
  V1502_RS13380 (V1502_13380) - 2693788..2694048 (-) 261 WP_409251143.1 hypothetical protein -
  V1502_RS13385 (V1502_13385) - 2694419..2695420 (-) 1002 WP_409251144.1 DUF2515 family protein -
  V1502_RS13390 (V1502_13390) recU 2695534..2696139 (+) 606 WP_409251145.1 Holliday junction resolvase RecU Machinery gene
  V1502_RS13395 (V1502_13395) - 2696189..2698819 (+) 2631 WP_409251146.1 PBP1A family penicillin-binding protein -
  V1502_RS13400 (V1502_13400) - 2698858..2699376 (-) 519 WP_409251147.1 YpoC family protein -
  V1502_RS13405 (V1502_13405) nth 2699377..2700027 (-) 651 WP_409251148.1 endonuclease III -
  V1502_RS13410 (V1502_13410) - 2700146..2700853 (-) 708 WP_409251149.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23513.04 Da        Isoelectric Point: 10.0052

>NTDB_id=929562 V1502_RS13390 WP_409251145.1 2695534..2696139(+) (recU) [Bacillus sp. SCS-153A]
MNFHYPNGKKFIAKTSPAAKKPAAKKVSYSNRGMTLEEDINETNQYYLVNGIAVIHKKPTPVQIVDVHYPQRSAAVIKEA
YFKQPSTTDYNGLYRGRYIDFEAKETRNKTSFPLQNLHTHQIQHMKQVDEQDGIAFILIRFSATEEIFFMKFKELYKYWE
RMERGGRKSIKKEEIEKDGVKIALGLHPRIDYLKTVQSIYL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=929562 V1502_RS13390 WP_409251145.1 2695534..2696139(+) (recU) [Bacillus sp. SCS-153A]
ATGAACTTCCATTATCCCAATGGGAAAAAATTTATTGCGAAAACTTCTCCAGCCGCTAAAAAGCCGGCTGCAAAGAAAGT
CTCATACAGTAACCGGGGGATGACACTTGAGGAAGATATCAATGAAACCAACCAATATTACTTAGTTAACGGTATCGCCG
TCATTCATAAAAAGCCTACGCCGGTTCAAATTGTAGATGTCCACTATCCCCAGCGAAGTGCTGCTGTCATTAAGGAAGCT
TATTTCAAGCAGCCATCGACAACAGACTATAATGGACTGTACCGAGGCAGATATATTGATTTTGAAGCAAAAGAAACAAG
GAACAAAACATCGTTTCCGCTGCAAAACCTCCATACTCACCAAATCCAGCATATGAAACAGGTGGATGAACAGGATGGAA
TTGCTTTTATATTGATACGCTTTTCGGCGACAGAAGAAATATTTTTCATGAAATTTAAAGAGCTTTATAAATATTGGGAA
AGGATGGAACGGGGCGGTCGAAAATCAATCAAGAAGGAAGAGATTGAAAAAGACGGGGTTAAAATCGCATTAGGTTTACA
CCCGCGCATCGATTATCTAAAAACCGTTCAGTCTATATATTTGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.452

98.01

0.622