Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   V1502_RS11530 Genome accession   NZ_CP143546
Coordinates   2333785..2334075 (-) Length   96 a.a.
NCBI ID   WP_409250796.1    Uniprot ID   -
Organism   Bacillus sp. SCS-153A     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2328785..2339075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1502_RS11500 (V1502_11500) - 2329371..2329475 (+) 105 WP_409250790.1 YjcZ family sporulation protein -
  V1502_RS11505 (V1502_11505) - 2329906..2330790 (-) 885 WP_409250791.1 DMT family transporter -
  V1502_RS11510 (V1502_11510) - 2330966..2331589 (-) 624 WP_409250792.1 DsbA family protein -
  V1502_RS11515 (V1502_11515) - 2331886..2332461 (+) 576 WP_409250793.1 hypothetical protein -
  V1502_RS11520 (V1502_11520) - 2332683..2332856 (-) 174 WP_409250794.1 hypothetical protein -
  V1502_RS11525 (V1502_11525) - 2333159..2333629 (+) 471 WP_409250795.1 GNAT family N-acetyltransferase -
  V1502_RS11530 (V1502_11530) abrB 2333785..2334075 (-) 291 WP_409250796.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  V1502_RS11535 (V1502_11535) - 2334368..2336338 (-) 1971 WP_409250797.1 phospholipase D-like domain-containing protein -
  V1502_RS11540 (V1502_11540) - 2336708..2337499 (-) 792 WP_409250798.1 aminoglycoside 6-adenylyltransferase -
  V1502_RS11545 (V1502_11545) - 2337513..2338529 (-) 1017 WP_409250799.1 ABC transporter permease -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10951.71 Da        Isoelectric Point: 4.6693

>NTDB_id=929561 V1502_RS11530 WP_409250796.1 2333785..2334075(-) (abrB) [Bacillus sp. SCS-153A]
MKSTGIVRKVDELGRVVIPIELRRTLGIAVKDSLEIYMDEDRIILQKYKPSMTCDVTGEDSEENLEIADGKLILSREGAE
KLLKELKESFRLDEVK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=929561 V1502_RS11530 WP_409250796.1 2333785..2334075(-) (abrB) [Bacillus sp. SCS-153A]
ATGAAATCGACTGGAATAGTGCGTAAAGTGGACGAGCTTGGAAGGGTCGTCATCCCGATAGAATTACGCCGTACTTTAGG
AATTGCTGTAAAAGATTCACTGGAGATTTATATGGATGAAGACAGAATCATCCTACAAAAATATAAACCAAGTATGACAT
GCGATGTAACGGGAGAAGATTCTGAAGAAAATCTGGAAATCGCTGATGGAAAACTGATTCTCAGCCGAGAAGGAGCAGAA
AAGCTCTTGAAGGAACTGAAGGAGTCGTTTCGATTGGATGAAGTGAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

70.33

94.792

0.667