Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   V1502_RS05905 Genome accession   NZ_CP143546
Coordinates   1202518..1204335 (+) Length   605 a.a.
NCBI ID   WP_409253441.1    Uniprot ID   -
Organism   Bacillus sp. SCS-153A     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1197518..1209335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1502_RS05885 (V1502_05885) - 1198373..1198945 (+) 573 WP_409253438.1 GNAT family N-acetyltransferase -
  V1502_RS05890 (V1502_05890) spxA 1199360..1199755 (+) 396 WP_006837718.1 transcriptional regulator SpxA -
  V1502_RS05895 (V1502_05895) mecA 1200517..1201185 (+) 669 WP_409253439.1 adaptor protein MecA Regulator
  V1502_RS05900 (V1502_05900) - 1201287..1202399 (+) 1113 WP_409253440.1 competence protein CoiA -
  V1502_RS05905 (V1502_05905) pepF 1202518..1204335 (+) 1818 WP_409253441.1 oligoendopeptidase F Regulator
  V1502_RS05910 (V1502_05910) - 1205896..1206753 (-) 858 WP_409253442.1 ClpXP adapter SpxH family protein -
  V1502_RS05915 (V1502_05915) - 1206759..1207157 (-) 399 WP_409253443.1 globin -
  V1502_RS05920 (V1502_05920) - 1207672..1208331 (-) 660 WP_409253444.1 lytic transglycosylase domain-containing protein -
  V1502_RS05925 (V1502_05925) - 1208359..1208937 (-) 579 WP_409253445.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 70264.97 Da        Isoelectric Point: 4.9302

>NTDB_id=929553 V1502_RS05905 WP_409253441.1 1202518..1204335(+) (pepF) [Bacillus sp. SCS-153A]
MANETAVKSLPNRKDIKEELTWRLEDIFASDDLWEKEYKEVQKLIKEAGSYQGTLSESAEHLYKALKFQDEVSERMGRLY
TYSHMRYDQDTTNSYYQGLDDRAKSLYTQLSSSFAYLVPEILEMEESRLNSFLEENKDLKLYKHALEEINLQRPHILSAE
QEALLAQASEVLSSSANTFGMLNNADMEFPSIKDENGEEVEITHGRYIRFLESDDRRVREEAFKAVYKTYGKFQNTFSST
LSGTVKKDNFSAEVRNYNSARHAALSANNIPETVYENLVKTVNDNLHLLHRYIKLRKKVLGLDKLHMYDLYTPLVKEVKM
EISYNEAKDMILKGLTPLGDEYIELLKEGFENRWVDVVENKGKRSGAYSSGAYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKFQPYPYGNYSIFVAEVASTCNEALLNNHLLNTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKAQ
EGEALTAEMLTKEYYELNKKYFGEEDITIDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYIEF
LKSGSSDYPIEVLKKAGVDMTVSQPIEEALKVFEESLNEMEKMLS

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=929553 V1502_RS05905 WP_409253441.1 1202518..1204335(+) (pepF) [Bacillus sp. SCS-153A]
ATGGCAAACGAAACAGCAGTAAAGAGTCTTCCGAATCGTAAGGATATTAAGGAAGAGTTGACATGGAGACTCGAAGATAT
TTTTGCGAGTGACGACTTATGGGAAAAAGAATATAAAGAAGTACAAAAACTGATTAAAGAGGCAGGCAGTTATCAGGGGA
CACTTTCTGAAAGTGCAGAACACCTCTACAAAGCACTGAAATTCCAAGATGAAGTGTCTGAGAGAATGGGCAGGCTGTAT
ACCTATTCTCATATGAGATATGACCAGGATACAACCAACTCTTATTATCAGGGACTTGATGACAGAGCCAAAAGCTTATA
TACACAGCTGTCCAGCTCATTTGCTTATCTTGTTCCGGAAATACTGGAGATGGAAGAGAGCAGACTTAACAGTTTCTTAG
AGGAAAATAAAGATCTTAAGCTGTATAAACACGCCTTGGAAGAAATCAACTTACAGCGACCACATATTTTATCTGCTGAG
CAAGAGGCGCTTCTTGCCCAGGCATCTGAAGTTTTGAGCTCATCAGCCAATACATTCGGCATGCTGAATAATGCTGATAT
GGAATTCCCGAGTATCAAAGACGAGAATGGAGAAGAAGTGGAAATTACACACGGCCGCTATATCCGTTTCTTGGAAAGTG
ATGACCGCCGTGTAAGGGAAGAAGCCTTCAAGGCTGTATATAAAACTTACGGCAAGTTTCAGAATACATTCTCAAGCACC
CTAAGCGGCACGGTTAAAAAAGATAATTTTAGTGCTGAAGTGCGTAACTATAATTCTGCCCGTCATGCAGCCCTGTCTGC
CAACAACATTCCGGAGACCGTTTATGAAAATCTAGTTAAGACGGTAAATGATAATCTGCATCTGCTTCACAGATATATCA
AGCTCCGCAAAAAAGTGCTTGGACTTGATAAGCTTCATATGTATGATTTGTATACTCCTCTTGTAAAAGAAGTGAAGATG
GAGATTTCATATAATGAGGCAAAGGACATGATCCTTAAAGGTTTGACACCGCTTGGTGATGAGTACATTGAACTGCTGAA
GGAAGGGTTCGAGAACCGCTGGGTGGATGTTGTCGAGAATAAGGGCAAGAGAAGCGGAGCCTATTCCTCCGGTGCATATG
GAACAAATCCATACATCCTCATGAACTGGCAGGATAATGTTAATAATCTGTTTACTCTGGCTCATGAATTCGGCCACAGT
GTACACAGTTATTATACAAGGAAATTCCAGCCATATCCTTATGGCAATTATTCAATCTTCGTAGCAGAAGTAGCTTCGAC
TTGTAATGAGGCTTTGTTGAATAATCACCTGCTTAATACGATTGATGATGAGAAGAAACGTTTGTATCTGCTGAATCATT
ACTTGGAAGGATTCAGAGGAACCGTCTTCCGCCAGACGATGTTTGCTGAGTTTGAGCATATCATTCATAAGAAGGCTCAA
GAAGGTGAAGCATTGACTGCTGAAATGCTGACCAAGGAGTACTATGAATTAAATAAAAAGTACTTCGGTGAAGAAGACAT
TACTATTGATGAGGAAATTGGCCTGGAATGGGCACGCATCCCTCATTTCTATTACAATTACTATGTTTATCAATATGCGA
CCGGCTTCAGCGCGGCCACCGCATTAAGTAAACAGATTCTTGAAGAAGGACAGCCGGCAGTGGAAAGATATATTGAATTC
CTGAAATCGGGAAGCTCTGATTACCCCATTGAAGTATTGAAAAAAGCGGGCGTGGACATGACAGTCTCTCAACCGATTGA
AGAAGCCCTGAAAGTATTCGAAGAAAGTTTAAATGAAATGGAAAAGATGCTTTCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.748

98.347

0.489