Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   V1502_RS05810 Genome accession   NZ_CP143546
Coordinates   1181019..1181978 (+) Length   319 a.a.
NCBI ID   WP_409253426.1    Uniprot ID   -
Organism   Bacillus sp. SCS-153A     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1176019..1186978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1502_RS05790 (V1502_05790) clpB 1176055..1178652 (+) 2598 WP_409253422.1 ATP-dependent chaperone ClpB -
  V1502_RS05795 (V1502_05795) - 1178722..1178904 (-) 183 WP_409253423.1 YjzD family protein -
  V1502_RS05800 (V1502_05800) - 1179293..1180033 (+) 741 WP_409253424.1 hydrolase -
  V1502_RS05805 (V1502_05805) - 1180060..1180821 (+) 762 WP_409253425.1 NAD-dependent epimerase/dehydratase family protein -
  V1502_RS05810 (V1502_05810) med 1181019..1181978 (+) 960 WP_409253426.1 BMP family ABC transporter substrate-binding protein Regulator
  V1502_RS05815 (V1502_05815) comZ 1181984..1182172 (+) 189 WP_409254290.1 ComZ family protein Regulator
  V1502_RS05820 (V1502_05820) - 1182588..1182818 (-) 231 WP_409253427.1 hypothetical protein -
  V1502_RS05825 (V1502_05825) - 1183503..1184438 (+) 936 WP_409253428.1 beta-ketoacyl-ACP synthase III -
  V1502_RS05830 (V1502_05830) fabF 1184504..1185742 (+) 1239 WP_409253429.1 beta-ketoacyl-ACP synthase II -
  V1502_RS05835 (V1502_05835) - 1185834..1186616 (+) 783 WP_409253430.1 DUF2268 domain-containing protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 35691.39 Da        Isoelectric Point: 5.1129

>NTDB_id=929548 V1502_RS05810 WP_409253426.1 1181019..1181978(+) (med) [Bacillus sp. SCS-153A]
MKKIVLYVLILLLLLAGCSQQGEKGNLNNVGLLVSETISDQVWGTKGYKGLLKIQSRFGVDVFYKEGVTTKQAVEKAVAE
YEKKGVNLIFGHGQEFSPHFNEIAEKYPDIHFVSFNGNASRSNTTSLNFEGYAMGFFGGMTAAHQTKTKNIGIVASFAWQ
PEVEGFIEGAKYQDSDVKVLVDYTNDWDHTEKAMVLLHTQLKQGVDIVYPAGDGYNISIIEKLKEKGLYAIGYVSDQSDM
GESTVMTSTVQHVDKLYEVVAERYSNEELRSGNIPFDFQDKVISMGKFSPLVDEEFRKVIESDIQNYIKTGNLPNERKD

Nucleotide


Download         Length: 960 bp        

>NTDB_id=929548 V1502_RS05810 WP_409253426.1 1181019..1181978(+) (med) [Bacillus sp. SCS-153A]
ATGAAAAAAATAGTTCTGTATGTCCTGATTCTGCTTTTATTGCTTGCGGGATGCTCGCAGCAGGGGGAAAAGGGCAATCT
TAATAATGTCGGCTTGCTGGTTTCTGAAACAATAAGCGACCAAGTTTGGGGCACAAAAGGGTACAAGGGGTTATTGAAGA
TTCAGTCCCGGTTTGGAGTGGATGTTTTTTATAAAGAAGGTGTCACCACCAAGCAGGCGGTTGAAAAGGCTGTTGCAGAG
TATGAGAAAAAAGGTGTTAATTTAATATTCGGGCACGGTCAGGAATTTTCTCCTCACTTTAATGAAATTGCCGAAAAGTA
TCCTGACATCCATTTTGTCAGCTTTAATGGAAATGCAAGCCGGTCCAACACGACGAGCCTTAATTTTGAAGGCTATGCAA
TGGGGTTCTTCGGAGGAATGACTGCTGCACATCAAACAAAGACCAAAAATATTGGAATTGTCGCTTCCTTCGCCTGGCAG
CCAGAAGTTGAGGGGTTCATCGAGGGAGCCAAATATCAGGACAGTGATGTAAAAGTTCTTGTCGATTATACAAATGACTG
GGACCACACGGAAAAGGCAATGGTGCTATTACATACTCAATTGAAACAAGGTGTGGATATTGTGTATCCTGCCGGAGATG
GTTACAATATATCAATTATTGAAAAGCTGAAGGAAAAAGGTTTGTACGCAATCGGATATGTGTCAGATCAATCCGATATG
GGAGAATCCACTGTAATGACCAGTACTGTTCAGCATGTAGATAAGTTGTATGAAGTTGTCGCAGAAAGATATTCTAATGA
AGAACTAAGATCCGGGAATATTCCTTTTGATTTCCAAGACAAAGTTATCTCCATGGGAAAATTCAGCCCGCTTGTAGATG
AAGAGTTCCGGAAAGTCATTGAAAGTGATATTCAGAACTATATTAAAACCGGTAATCTGCCAAATGAAAGGAAGGACTGA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(29-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

52.581

97.179

0.511