Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   V0M98_RS03760 Genome accession   NZ_CP143487
Coordinates   844239..845828 (-) Length   529 a.a.
NCBI ID   WP_338921747.1    Uniprot ID   -
Organism   Pseudomonas silesiensis strain G3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 839239..850828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V0M98_RS03745 (V0M98_03745) - 841184..841585 (+) 402 WP_338921745.1 type IV pilin protein -
  V0M98_RS03750 (V0M98_03750) thiO 841638..842738 (+) 1101 WP_064675831.1 glycine oxidase ThiO -
  V0M98_RS03755 (V0M98_03755) pilR 842896..844242 (-) 1347 WP_338921746.1 sigma-54 dependent transcriptional regulator Regulator
  V0M98_RS03760 (V0M98_03760) pilS 844239..845828 (-) 1590 WP_338921747.1 ATP-binding protein Regulator
  V0M98_RS03765 (V0M98_03765) - 845818..846051 (-) 234 WP_154992894.1 PP0621 family protein -
  V0M98_RS03770 (V0M98_03770) - 846235..847257 (-) 1023 WP_338921748.1 outer membrane protein assembly factor BamD -
  V0M98_RS03775 (V0M98_03775) rluD 847409..848371 (+) 963 WP_338921749.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  V0M98_RS03780 (V0M98_03780) pgeF 848368..849087 (+) 720 WP_338921750.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58504.18 Da        Isoelectric Point: 7.8611

>NTDB_id=929143 V0M98_RS03760 WP_338921747.1 844239..845828(-) (pilS) [Pseudomonas silesiensis strain G3]
MIAETSSHFSNQAQRLLRLYHLYRLSVGITLVLLISSNMDNQLLRFANDDLLRNGSWLYLVLNILLVVFLGNTRRPTQLF
SLALADVLLLCGLFYAGGGVASAIGNLLIVSVAISNTLLRRRIGLLIAAVGALGIVGASLLISFSHPASANDYLQVGTLG
ALCFAAALLVQGLTRRLEVSESLAEQRASEVVGLEALNALILQRMRTGILVLDDQRRVQLANHSALTLLGRDGLEGHLID
DCSPALVERLQLWRNNPTLRPQSIKVDGSGLELQPSFIALDQSPHHQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELNGSDRRLTQIIQDHSQRMNRVIENVLQLSRRQQTVPQRLDLKPWLERFVAETREGATAR
QQIHLHIGSGDFKTLMDPNQLTQIVDNLVRNGWRHSIQVHDQAQVWLELFVDRASQLPTLEVRDDGTGVAPDHQAKLFEP
FFTTSTQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=929143 V0M98_RS03760 WP_338921747.1 844239..845828(-) (pilS) [Pseudomonas silesiensis strain G3]
GTGATCGCTGAGACGTCCAGTCACTTCAGCAATCAGGCCCAGCGGCTGCTGCGGCTCTACCATCTTTATCGTTTAAGCGT
CGGCATCACCCTGGTGCTGTTGATCTCCAGCAACATGGACAACCAGTTGCTCAGATTCGCCAATGACGATCTGCTGCGCA
ATGGCAGCTGGCTGTACCTGGTACTCAATATTCTGCTGGTGGTATTTCTAGGGAATACCCGGCGCCCTACGCAATTATTC
AGTCTGGCCCTGGCCGACGTGCTGCTGCTGTGCGGCCTGTTCTACGCCGGCGGCGGCGTGGCCAGCGCCATCGGCAACCT
GCTGATCGTGTCGGTGGCGATCAGCAACACCTTGTTGCGGCGGCGTATCGGCTTGCTGATTGCCGCTGTCGGCGCGCTCG
GCATCGTCGGGGCGAGCCTGCTGATAAGCTTCAGCCATCCGGCCAGCGCCAACGACTACCTGCAAGTCGGTACGCTGGGC
GCCCTGTGCTTCGCCGCAGCACTGTTGGTACAAGGCCTGACCCGGCGCCTGGAAGTCAGTGAAAGCCTGGCCGAGCAACG
GGCCAGCGAAGTGGTCGGCCTCGAAGCCCTCAATGCGCTGATCCTGCAACGCATGCGCACCGGCATCCTGGTACTCGACG
ACCAGCGACGGGTGCAACTGGCCAACCACAGCGCGTTGACACTGCTGGGGCGGGACGGGCTTGAAGGCCATCTTATCGAT
GATTGCTCGCCCGCTCTGGTCGAACGCTTGCAACTGTGGCGCAACAATCCGACGCTGCGCCCCCAGAGCATCAAAGTCGA
CGGTAGTGGCCTGGAACTGCAACCGAGCTTTATTGCCCTGGATCAAAGCCCTCACCACCAGACTCTGGTATTCCTCGAAG
ACCTCGCCCAGATCGCCCAACAGGCCCAACAATTGAAACTTGCCGCCCTCGGCCGCCTGACAGCCGGCATCGCCCATGAA
ATCCGCAATCCACTGGGCGCCATCAGTCACGCCGCGCAGCTATTACAGGAATCAGAGGAACTCAATGGCTCGGATCGACG
TCTGACCCAGATTATTCAAGACCACTCTCAGCGAATGAATCGGGTAATCGAAAACGTCCTGCAACTGTCCCGTCGGCAAC
AGACCGTGCCGCAACGGCTCGACCTGAAGCCTTGGCTGGAACGGTTCGTCGCCGAAACCCGAGAGGGCGCGACCGCGCGC
CAGCAGATTCACCTGCACATCGGTTCGGGCGACTTCAAAACCCTGATGGATCCGAACCAGCTGACCCAGATCGTCGACAA
TCTGGTGCGCAACGGCTGGCGCCATAGCATTCAGGTTCACGACCAGGCGCAAGTCTGGCTCGAACTGTTTGTCGACCGCG
CCAGCCAGCTGCCGACTCTCGAGGTCCGGGACGATGGAACCGGTGTGGCACCGGATCATCAGGCAAAGCTGTTCGAACCG
TTCTTCACCACCAGCACCCAAGGGACGGGGCTTGGACTTTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGTATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.189

100

0.603