Detailed information NTG0929142

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: V0M98_RS03755
• Genome accession: NZ_CP143487
• Coordinates: 842896..844242 (-)
• Length: 448 a.a.
• NCBI ID: WP_338921746.1
• Uniprot ID: -
• Organism: Pseudomonas silesiensis strain G3
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 837896..849242

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V0M98_RS03740 (V0M98_03740)	-	838047..841169 (+)	3123	WP_338921744.1	PilC/PilY family type IV pilus protein	-
V0M98_RS03745 (V0M98_03745)	-	841184..841585 (+)	402	WP_338921745.1	type IV pilin protein	-
V0M98_RS03750 (V0M98_03750)	thiO	841638..842738 (+)	1101	WP_064675831.1	glycine oxidase ThiO	-
V0M98_RS03755 (V0M98_03755)	pilR	842896..844242 (-)	1347	WP_338921746.1	sigma-54 dependent transcriptional regulator	Regulator
V0M98_RS03760 (V0M98_03760)	pilS	844239..845828 (-)	1590	WP_338921747.1	ATP-binding protein	Regulator
V0M98_RS03765 (V0M98_03765)	-	845818..846051 (-)	234	WP_154992894.1	PP0621 family protein	-
V0M98_RS03770 (V0M98_03770)	-	846235..847257 (-)	1023	WP_338921748.1	outer membrane protein assembly factor BamD	-
V0M98_RS03775 (V0M98_03775)	rluD	847409..848371 (+)	963	WP_338921749.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
V0M98_RS03780 (V0M98_03780)	pgeF	848368..849087 (+)	720	WP_338921750.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49857.16 Da
• Isoelectric Point: 6.7247

>NTDB_id=929142 V0M98_RS03755 WP_338921746.1 842896..844242(-) (pilR) [Pseudomonas silesiensis strain G3]
MNTSPQQKVLIVDDEPDIRELLEITLGRMKLHTFSARNLGEAQALLRNETFDLCLTDMRLPDGTGLELVHYIQQRHPQVP
VAMITAYGSLETAINALKAGAFDFLTKPVDLARLRELVTSALRLTAPGGVSSTVDRQLLGDSLPMRSLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRANRPFIPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIETLA
IHVLKRLAAGSGQPAAKLHPHALDALKSYRFPGNVRELENMLERAHTLCEDKQIEAGDLRLADGNCAAEGGVPDLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=929142 V0M98_RS03755 WP_338921746.1 842896..844242(-) (pilR) [Pseudomonas silesiensis strain G3]
TTGAACACAAGCCCACAGCAAAAAGTCCTTATCGTCGACGACGAGCCGGACATCCGCGAACTCCTGGAAATCACCCTCGG
ACGGATGAAACTTCACACCTTCAGTGCCCGCAACCTTGGCGAAGCCCAGGCGCTGCTGAGGAACGAGACATTCGACCTGT
GCCTGACCGACATGCGTCTGCCGGACGGCACCGGCCTGGAGCTGGTGCACTACATCCAGCAACGCCATCCACAGGTACCG
GTGGCAATGATTACTGCCTATGGCAGCCTTGAAACAGCGATCAACGCACTCAAGGCCGGTGCCTTCGACTTCCTGACCAA
ACCGGTAGACCTTGCCCGCCTGCGGGAACTGGTCACCAGTGCCCTGCGCCTGACCGCACCTGGCGGCGTCAGCAGCACCG
TCGATCGGCAGCTGCTGGGTGACTCATTGCCCATGCGCAGCCTGCGCAAACAAATCGACAAACTGGCCCGCAGCCAGGCC
CCGGTGTACATCAGCGGCGAGTCTGGCAGCGGCAAGGAACTGGTGGCGCGACTGATCCACGAGCAAGGGCCACGGGCCAA
CCGCCCCTTTATCCCGGTGAACTGCGGGGCGATTCCCTCGGAATTGATGGAAAGCGAGTTTTTCGGTCATCGTAAAGGCA
GCTTCAGCGGTGCCATCGAAGACAAGCCCGGCCTGTTCCAGGCGGCGCACGGCGGTACGCTGTTCCTTGACGAAGTGGCT
GACTTGCCACTGGCGATGCAGGTCAAACTACTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGTGTCGGCGGCCAGCAGGA
AACCGTGGTCGATGTGCGCATCCTCTGCGCCACCCACAAAGACCTGGACGCTGAAGTCGCCGCCGAGCGCTTCCGTCAGG
ACTTGTACTATCGGCTGAACGTGATCGAACTGAGGGTTCCGTCCTTGCGTGAACGTCGGGACGATATCGAGACCCTGGCC
ATCCATGTTCTCAAACGGCTGGCAGCCGGTAGCGGGCAGCCCGCGGCAAAACTCCATCCACACGCTCTCGACGCGCTGAA
AAGCTATCGTTTTCCGGGCAATGTGCGGGAACTGGAAAACATGCTCGAACGGGCTCACACGCTGTGTGAAGACAAACAGA
TCGAAGCGGGCGACCTGCGCCTGGCCGACGGCAACTGTGCCGCAGAAGGCGGTGTGCCGGACCTGACGCAGATCGACAAT
CTGGAAGACTATCTGGAAAACGTCGAGCGCAAACTGATCCTCCAGGCGCTGGAGGAAACCCGCTGGAACCGGACGGCGGC
TGCACAGCGGTTGAATCTTTCTTTTCGGTCGATGCGTTATCGGCTCAAGAAATTGGGTCTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.684	98.884	0.788
pilR	Acinetobacter baumannii strain A118	48.596	100	0.502