Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   AB3239_RS08350 Genome accession   NZ_CP166831
Coordinates   1580899..1581924 (+) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain TE3T-UV25     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1575899..1586924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3239_RS08315 (AB3239_08315) ylbE 1576199..1576438 (+) 240 WP_003232231.1 YlbE-like family protein -
  AB3239_RS08320 (AB3239_08320) ylbF 1576554..1577003 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  AB3239_RS08325 (AB3239_08325) ylbG 1577058..1577330 (+) 273 WP_009967171.1 YlbG family protein -
  AB3239_RS08330 (AB3239_08330) rsmD 1577653..1578207 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AB3239_RS08335 (AB3239_08335) coaD 1578212..1578697 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  AB3239_RS08340 (AB3239_08340) spoVV 1578708..1579934 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  AB3239_RS08345 (AB3239_08345) ylbK 1580115..1580897 (+) 783 WP_021479345.1 patatin family protein -
  AB3239_RS08350 (AB3239_08350) sepM 1580899..1581924 (+) 1026 WP_003245451.1 protease DdcP Regulator
  AB3239_RS08355 (AB3239_08355) tmcAL 1581941..1583188 (-) 1248 WP_021479344.1 nucleotidyltransferase -
  AB3239_RS08360 (AB3239_08360) - 1583185..1583370 (-) 186 WP_103803451.1 hypothetical protein -
  AB3239_RS08365 (AB3239_08365) ylbN 1583398..1583916 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  AB3239_RS08370 (AB3239_08370) rpmF 1583938..1584117 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  AB3239_RS08375 (AB3239_08375) gerR 1584263..1584844 (+) 582 WP_172861357.1 sporulation specific transcriptional regulator GerR -
  AB3239_RS08380 (AB3239_08380) ylbP 1584901..1585383 (-) 483 WP_014476736.1 N-acetyltransferase -
  AB3239_RS08385 (AB3239_08385) panEA 1585543..1586439 (+) 897 WP_077670707.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=929074 AB3239_RS08350 WP_003245451.1 1580899..1581924(+) (sepM) [Bacillus subtilis strain TE3T-UV25]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=929074 AB3239_RS08350 WP_003245451.1 1580899..1581924(+) (sepM) [Bacillus subtilis strain TE3T-UV25]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCT
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCGAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402