Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   AB3239_RS08320 Genome accession   NZ_CP166831
Coordinates   1576554..1577003 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain TE3T-UV25     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1571554..1582003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3239_RS08280 (AB3239_08280) ctaE 1571572..1572195 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  AB3239_RS08285 (AB3239_08285) ctaF 1572198..1572530 (+) 333 WP_172861356.1 cytochrome c oxidase subunit IVB -
  AB3239_RS08290 (AB3239_08290) ctaG 1572557..1573450 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  AB3239_RS08295 (AB3239_08295) ylbA 1573482..1573844 (-) 363 WP_003232238.1 YugN family protein -
  AB3239_RS08300 (AB3239_08300) ylbB 1573984..1574430 (+) 447 WP_003221362.1 CBS domain-containing protein -
  AB3239_RS08305 (AB3239_08305) ylbC 1574514..1575554 (+) 1041 WP_041850862.1 CAP domain-containing protein -
  AB3239_RS08310 (AB3239_08310) ylbD 1575785..1576183 (+) 399 WP_032725642.1 YlbD family protein -
  AB3239_RS08315 (AB3239_08315) ylbE 1576199..1576438 (+) 240 WP_003232231.1 YlbE-like family protein -
  AB3239_RS08320 (AB3239_08320) ylbF 1576554..1577003 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  AB3239_RS08325 (AB3239_08325) ylbG 1577058..1577330 (+) 273 WP_009967171.1 YlbG family protein -
  AB3239_RS08330 (AB3239_08330) rsmD 1577653..1578207 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AB3239_RS08335 (AB3239_08335) coaD 1578212..1578697 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  AB3239_RS08340 (AB3239_08340) spoVV 1578708..1579934 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  AB3239_RS08345 (AB3239_08345) ylbK 1580115..1580897 (+) 783 WP_021479345.1 patatin family protein -
  AB3239_RS08350 (AB3239_08350) sepM 1580899..1581924 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=929073 AB3239_RS08320 WP_003221370.1 1576554..1577003(+) (ylbF) [Bacillus subtilis strain TE3T-UV25]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=929073 AB3239_RS08320 WP_003221370.1 1576554..1577003(+) (ylbF) [Bacillus subtilis strain TE3T-UV25]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1