Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   VR624_RS06610 Genome accession   NZ_CP143432
Coordinates   1402691..1403326 (+) Length   211 a.a.
NCBI ID   WP_019827919.1    Uniprot ID   A0A8I1FZ19
Organism   Pseudomonas psychrophila strain A     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1397691..1408326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR624_RS06600 (VR624_06600) - 1399663..1400178 (-) 516 WP_019827916.1 DUF2062 domain-containing protein -
  VR624_RS06605 (VR624_06605) comA 1400312..1402531 (+) 2220 WP_048350949.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VR624_RS06610 (VR624_06610) exbB 1402691..1403326 (+) 636 WP_019827919.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VR624_RS06615 (VR624_06615) - 1403323..1403751 (+) 429 WP_019827920.1 ExbD/TolR family protein -
  VR624_RS06620 (VR624_06620) lpxK 1403751..1404761 (+) 1011 WP_048350948.1 tetraacyldisaccharide 4'-kinase -
  VR624_RS06625 (VR624_06625) - 1404787..1404972 (+) 186 WP_019827923.1 Trm112 family protein -
  VR624_RS06630 (VR624_06630) kdsB 1404969..1405733 (+) 765 WP_046809896.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VR624_RS06635 (VR624_06635) murB 1405730..1406749 (+) 1020 WP_019827925.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22929.20 Da        Isoelectric Point: 6.8768

>NTDB_id=929062 VR624_RS06610 WP_019827919.1 1402691..1403326(+) (exbB) [Pseudomonas psychrophila strain A]
MWELVKSGGWMMLPIILSSVAALGIIVERLWTLRASRVTPEHLLGQVWVWIKDKQMDKEKLKLLRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDREVDVVGSKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=929062 VR624_RS06610 WP_019827919.1 1402691..1403326(+) (exbB) [Pseudomonas psychrophila strain A]
GTGTGGGAACTGGTCAAATCAGGTGGCTGGATGATGCTGCCGATCATTCTGAGCTCTGTTGCCGCGCTGGGCATTATTGT
TGAGCGTCTGTGGACCCTGCGTGCCAGTCGCGTAACCCCGGAACATCTGCTCGGACAGGTCTGGGTCTGGATCAAAGACA
AGCAGATGGACAAGGAAAAACTCAAATTACTGCGCGCCGACTCGCCGCTGGGTGAGATTTTGGCAGCGGGTCTGGCCAAC
TCAAAACATGGTCGCGAGATCATGAAAGAGTGTATCGAAGAGGCCGCTGCCCGGGTGATCCACGAACTTGAGCGTTATCT
CAATGCGCTGGGTACGATTGCTGCAATGGCGCCGCTGCTGGGCTTGCTGGGCACCGTACTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGGTCGGGCATGACCACCAATGCTGCCGTGCTGGCGGGCGGTATTTCCAAGGCGTTGATCACCACTGCC
GCCGGTCTGATGGTGGGTATCCCTGCAGTCTTCTTCCATCGCTTCCTGCAACGCCGTGTCGACGAGCTGGTGGTCGGGAT
GGAACAAGAGGCGATCAAGCTGGTTGAGGTGATACAAGGCGACCGTGAAGTCGATGTGGTCGGGAGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853