Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   VR624_RS06605 Genome accession   NZ_CP143432
Coordinates   1400312..1402531 (+) Length   739 a.a.
NCBI ID   WP_048350949.1    Uniprot ID   -
Organism   Pseudomonas psychrophila strain A     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1395312..1407531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR624_RS06585 (VR624_06585) - 1395637..1396431 (-) 795 WP_048350952.1 hypothetical protein -
  VR624_RS06590 (VR624_06590) - 1396428..1397276 (-) 849 WP_048350951.1 DUF4123 domain-containing protein -
  VR624_RS06595 (VR624_06595) - 1397273..1399348 (-) 2076 WP_048350950.1 type VI secretion system tip protein VgrG -
  VR624_RS06600 (VR624_06600) - 1399663..1400178 (-) 516 WP_019827916.1 DUF2062 domain-containing protein -
  VR624_RS06605 (VR624_06605) comA 1400312..1402531 (+) 2220 WP_048350949.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VR624_RS06610 (VR624_06610) exbB 1402691..1403326 (+) 636 WP_019827919.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VR624_RS06615 (VR624_06615) - 1403323..1403751 (+) 429 WP_019827920.1 ExbD/TolR family protein -
  VR624_RS06620 (VR624_06620) lpxK 1403751..1404761 (+) 1011 WP_048350948.1 tetraacyldisaccharide 4'-kinase -
  VR624_RS06625 (VR624_06625) - 1404787..1404972 (+) 186 WP_019827923.1 Trm112 family protein -
  VR624_RS06630 (VR624_06630) kdsB 1404969..1405733 (+) 765 WP_046809896.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VR624_RS06635 (VR624_06635) murB 1405730..1406749 (+) 1020 WP_019827925.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 80638.80 Da        Isoelectric Point: 9.9901

>NTDB_id=929061 VR624_RS06605 WP_048350949.1 1400312..1402531(+) (comA) [Pseudomonas psychrophila strain A]
MYTGMFALATGLMALRFLPALPSPGWLLVMLMAALLILAMRLWPVGLFVLGLTWACAQGQRALDDRLPVALDGRTLWVEG
RVIGLPQQTETSVRFELQGARSRHGALPATIRLSWYGGLPVNSGEHWRLAVTLKRPKGLLNPQSFDYQAWLLAQRIGATG
VVKEGQLLAAASHAWRDGLRQRLLHIDGNGRESWLAALVMGDGSGLNRDDWTLLQATGTVHLLVISGQHIGLFAGLIYGL
VALLARYGLWPGYLPWLPWACGLAFAGATGYGMLAGFEVPVQRACVMLGLVLIWRLRFRHLGVWLPFLLALNAVLIVEPL
ASLMPGFWLSFSAVAVLIYTFSGRLGAWDWRGVWLRPHGLIALGLFPMLWILGLPISLTGPLANLIAVPWISLLVLPTAL
LGTLMLPVPWLGESLLWLSGGLLDLLINGLALLADVVTPWLPAVVPIYIWLLSALGALILLLPAGVALRPLGWPLVLLAV
FTPREHIPHGEVEVLQLDVGQGLAIVLRTRNHTLLYDAGPKVRDFDQGERVVVPVLRSLGVGELDVMLLSHADSDHAGGA
LAVQRSMNVARVLGGDVSGLPKQLRAQPCANGESWVWDGVRFSLWQWPGASDSNQKSCVLQVQARDERLLLTGDIDAHAE
RALLRSPLAVPTRWLQSPHHGSKTSSSMAFLKALVPERVLVSRGHGNNFGHPHPQVMSRYQALGVQVWDSAEQGAVWFRL
GASGKVQSMAGQRRFWRDG

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=929061 VR624_RS06605 WP_048350949.1 1400312..1402531(+) (comA) [Pseudomonas psychrophila strain A]
ATGTACACAGGGATGTTTGCGTTGGCGACGGGCCTGATGGCACTGCGGTTTTTACCCGCGCTGCCGTCACCGGGGTGGTT
GCTGGTGATGTTAATGGCGGCGCTATTGATTTTGGCTATGCGTCTCTGGCCGGTGGGTCTTTTTGTGCTTGGGTTGACTT
GGGCGTGTGCACAGGGGCAAAGGGCGCTTGATGATCGCCTGCCAGTCGCACTCGACGGCCGGACGCTTTGGGTCGAAGGG
CGGGTCATCGGATTGCCGCAGCAGACGGAAACTTCCGTGCGGTTTGAGTTGCAGGGTGCCCGCTCGCGCCACGGCGCGTT
GCCTGCCACCATCAGGTTGAGCTGGTATGGCGGATTGCCCGTCAACAGTGGCGAACATTGGCGACTGGCGGTCACGCTCA
AACGTCCCAAGGGGTTGCTCAACCCTCAGTCGTTTGACTATCAGGCCTGGCTGCTGGCGCAACGCATTGGCGCTACGGGC
GTGGTCAAGGAGGGTCAGTTACTGGCTGCGGCCAGCCATGCCTGGCGTGATGGTTTGCGTCAGCGTTTGTTGCACATCGA
TGGCAATGGTCGGGAGTCGTGGCTGGCAGCGCTGGTCATGGGCGACGGTTCGGGCTTGAACCGTGATGACTGGACGCTGC
TACAAGCAACTGGAACCGTACACCTGCTGGTTATTTCGGGCCAGCACATAGGGTTGTTTGCCGGATTGATCTACGGGCTG
GTCGCGTTGCTGGCGCGTTATGGCCTGTGGCCGGGCTATTTGCCGTGGCTGCCCTGGGCCTGTGGCCTGGCGTTTGCGGG
GGCTACGGGTTACGGCATGCTCGCCGGCTTTGAAGTGCCGGTGCAGCGCGCGTGCGTGATGCTGGGGCTGGTGTTGATCT
GGCGTTTGCGGTTTCGTCATCTGGGCGTGTGGCTGCCATTTTTGCTGGCGCTCAATGCGGTGCTGATTGTGGAGCCACTG
GCGAGTTTGATGCCGGGGTTCTGGTTGTCATTCAGTGCTGTGGCGGTGCTGATTTATACCTTCAGCGGGCGGCTGGGGGC
TTGGGATTGGAGGGGTGTCTGGCTGCGCCCCCATGGACTGATAGCCCTGGGCTTGTTTCCGATGCTGTGGATTCTCGGTC
TGCCCATCAGCCTGACCGGCCCGCTGGCCAATTTGATTGCCGTGCCCTGGATCAGCCTTTTGGTGCTGCCGACGGCATTG
CTGGGAACGTTGATGCTGCCGGTGCCCTGGCTTGGTGAAAGCCTGTTGTGGTTATCGGGTGGCTTGCTCGACTTGTTGAT
CAACGGGTTGGCCCTGCTGGCTGATGTTGTCACGCCCTGGTTGCCCGCAGTCGTGCCGATCTACATTTGGCTGTTGAGTG
CTCTGGGGGCGCTGATCCTGTTGCTCCCGGCCGGGGTAGCCCTCAGGCCGTTGGGGTGGCCGCTGGTGCTGTTGGCCGTT
TTTACGCCTCGCGAGCACATCCCTCACGGTGAGGTCGAGGTCTTGCAGCTGGATGTCGGGCAGGGGCTGGCAATTGTCTT
GCGGACCCGTAATCACACCCTTTTGTATGACGCAGGCCCCAAAGTCCGAGATTTTGACCAGGGAGAGCGGGTGGTGGTGC
CGGTGTTGCGTTCGTTGGGGGTGGGCGAGCTGGATGTGATGCTGCTGAGCCATGCTGATTCAGATCATGCGGGAGGAGCG
CTGGCGGTTCAGCGATCGATGAACGTGGCACGGGTGCTCGGTGGTGATGTGTCGGGGTTGCCAAAGCAGTTGCGGGCGCA
GCCGTGTGCCAACGGGGAGAGCTGGGTGTGGGACGGCGTGAGGTTTTCACTCTGGCAGTGGCCAGGCGCGAGCGATAGCA
ATCAGAAGTCTTGTGTCCTGCAGGTGCAAGCACGCGACGAACGGTTACTGCTGACGGGGGATATTGACGCCCATGCAGAG
CGAGCGTTGCTGCGCAGTCCGCTGGCCGTGCCGACCCGCTGGTTGCAATCTCCCCACCACGGCAGCAAGACCTCGTCGTC
AATGGCTTTTCTCAAGGCGCTGGTGCCTGAAAGGGTGCTGGTTTCCCGGGGGCACGGTAACAATTTTGGTCACCCGCATC
CGCAAGTGATGTCCCGTTATCAAGCGTTGGGGGTGCAGGTATGGGACAGCGCCGAGCAAGGAGCTGTGTGGTTTCGTTTG
GGGGCGTCCGGCAAGGTTCAGAGCATGGCCGGCCAACGCCGGTTCTGGCGCGATGGATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)

Domain of unknown function (DUF4131) (DUF4131)

(19-167)

Competence protein (Competence)

(198-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.249

97.294

0.576