Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   SA496_RS27580 Genome accession   NZ_CP143312
Coordinates   5867148..5867555 (+) Length   135 a.a.
NCBI ID   WP_003455569.1    Uniprot ID   A0AAD1BY44
Organism   Pseudomonas sp. JS3066     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5862148..5872555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA496_RS27550 (SA496_27550) - 5862269..5863276 (-) 1008 WP_120653551.1 aspartate carbamoyltransferase catalytic subunit -
  SA496_RS27555 (SA496_27555) pyrR 5863313..5863825 (-) 513 WP_120653550.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  SA496_RS27560 (SA496_27560) ruvX 5863848..5864288 (-) 441 WP_120653549.1 Holliday junction resolvase RuvX -
  SA496_RS27565 (SA496_27565) - 5864288..5864854 (-) 567 WP_120653548.1 YqgE/AlgH family protein -
  SA496_RS27570 (SA496_27570) - 5864968..5865861 (-) 894 WP_120653547.1 energy transducer TonB -
  SA496_RS27575 (SA496_27575) gshB 5865918..5866880 (-) 963 WP_153918755.1 glutathione synthase -
  SA496_RS27580 (SA496_27580) pilG 5867148..5867555 (+) 408 WP_003455569.1 twitching motility response regulator PilG Regulator
  SA496_RS27585 (SA496_27585) pilH 5867601..5867966 (+) 366 WP_077524194.1 twitching motility response regulator PilH -
  SA496_RS27590 (SA496_27590) - 5868022..5868558 (+) 537 WP_120653545.1 chemotaxis protein CheW -
  SA496_RS27595 (SA496_27595) - 5868698..5870746 (+) 2049 WP_153918756.1 methyl-accepting chemotaxis protein -
  SA496_RS27600 (SA496_27600) - 5870809..5871669 (+) 861 WP_120655302.1 protein-glutamate O-methyltransferase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14828.19 Da        Isoelectric Point: 6.7128

>NTDB_id=928659 SA496_RS27580 WP_003455569.1 5867148..5867555(+) (pilG) [Pseudomonas sp. JS3066]
MEQHSEGLKVMVIDDSKTIRRTAETLLKKVGCEVITAVDGFDALAKIADSHPNIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAIKTHVPDFTPVEQAS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=928659 SA496_RS27580 WP_003455569.1 5867148..5867555(+) (pilG) [Pseudomonas sp. JS3066]
ATGGAACAGCATTCCGAGGGTTTGAAGGTCATGGTGATCGACGATTCGAAAACGATTCGTCGCACAGCCGAGACTCTGCT
CAAGAAAGTGGGGTGCGAGGTCATCACTGCAGTTGATGGTTTCGACGCCTTGGCCAAGATCGCCGATTCCCACCCGAACA
TCATCTTCGTCGACATCATGATGCCGCGCCTGGACGGTTATCAGACCTGCGCCCTGATCAAGAACAACAGTGCTTTCAAA
TCCACCCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGTCGCATCGTCGGTTCCGATCAGTA
CCTCACCAAGCCTTTCAGCAAGGAAGAGCTGCTCGGCGCGATCAAGACTCACGTCCCCGATTTCACCCCGGTGGAGCAAG
CCTCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76.8

92.593

0.711
  vicR Streptococcus mutans UA159

41.27

93.333

0.385