Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   VSX76_RS15940 Genome accession   NZ_CP143311
Coordinates   2975544..2975915 (+) Length   123 a.a.
NCBI ID   WP_040576291.1    Uniprot ID   -
Organism   Methylophaga thalassica strain IOM01     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2970544..2980915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSX76_RS15925 (VSX76_15920) gatB 2971206..2972648 (+) 1443 WP_284451583.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  VSX76_RS15930 (VSX76_15925) - 2972859..2974001 (+) 1143 WP_284451582.1 FIST signal transduction protein -
  VSX76_RS15935 (VSX76_15930) gshA 2974007..2975281 (-) 1275 WP_284451581.1 glutamate--cysteine ligase -
  VSX76_RS15940 (VSX76_15935) pilG 2975544..2975915 (+) 372 WP_040576291.1 response regulator Regulator
  VSX76_RS15945 (VSX76_15940) pilH 2975919..2976284 (+) 366 WP_284451580.1 twitching motility response regulator PilH -
  VSX76_RS15950 (VSX76_15945) - 2976287..2976835 (+) 549 WP_284451579.1 chemotaxis protein CheW -
  VSX76_RS15955 (VSX76_15950) - 2976860..2978125 (+) 1266 WP_284451578.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13712.84 Da        Isoelectric Point: 6.7113

>NTDB_id=928628 VSX76_RS15940 WP_040576291.1 2975544..2975915(+) (pilG) [Methylophaga thalassica strain IOM01]
MVIDDSNTIRRTAETLLKKAGCDVLTADNGFEALPVISAHHPDILFIDIMMPRLDGYQTCALVKNNPKFRDIPVVMLSSK
DGLFDRAKGRVVGAEQYLTKPFTREDLLGAIRTHLLEKTQDAN

Nucleotide


Download         Length: 372 bp        

>NTDB_id=928628 VSX76_RS15940 WP_040576291.1 2975544..2975915(+) (pilG) [Methylophaga thalassica strain IOM01]
ATGGTGATTGATGACAGTAACACCATTCGCCGCACAGCTGAAACACTGTTAAAAAAAGCTGGTTGTGATGTACTGACGGC
TGATAATGGATTTGAAGCTTTACCCGTTATTAGCGCTCATCACCCAGATATTTTGTTTATTGACATCATGATGCCACGAC
TGGATGGATATCAGACCTGTGCATTAGTTAAAAATAACCCTAAATTTAGGGACATACCCGTAGTAATGCTCTCCAGCAAG
GATGGTTTATTTGATAGAGCAAAAGGGCGCGTTGTAGGGGCTGAACAATATTTAACCAAGCCTTTTACCCGTGAAGACTT
ACTCGGTGCCATCCGAACACATTTGCTGGAAAAAACTCAGGACGCAAATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(1-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

69.565

93.496

0.65
  pilH Synechocystis sp. PCC 6803

39.13

93.496

0.366