Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   AB9K98_RS04690 Genome accession   NZ_CP166764
Coordinates   943949..944605 (-) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain CRE444     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 938949..949605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9K98_RS04660 (AB9K98_04660) - 939944..940912 (-) 969 WP_074194686.1 IS5 family transposase -
  AB9K98_RS04680 (AB9K98_04680) pgsA 941515..942063 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB9K98_RS04685 (AB9K98_04685) uvrC 942120..943952 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  AB9K98_RS04690 (AB9K98_04690) letA 943949..944605 (-) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  AB9K98_RS04695 (AB9K98_04695) - 944747..944818 (+) 72 Protein_927 transcriptional regulator -
  AB9K98_RS04700 (AB9K98_04700) yecU 944901..945077 (+) 177 WP_001696741.1 protein YecU -
  AB9K98_RS04705 (AB9K98_04705) yecF 945064..945288 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  AB9K98_RS04710 (AB9K98_04710) sdiA 945356..946078 (-) 723 WP_032256217.1 transcriptional regulator SdiA -
  AB9K98_RS04715 (AB9K98_04715) tcyN 946307..947059 (-) 753 WP_073516171.1 L-cystine ABC transporter ATP-binding protein TcyN -
  AB9K98_RS04720 (AB9K98_04720) tcyL 947056..947724 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  AB9K98_RS04725 (AB9K98_04725) dcyD 947739..948725 (-) 987 WP_001695857.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=928467 AB9K98_RS04690 WP_000611335.1 943949..944605(-) (letA) [Escherichia coli strain CRE444]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=928467 AB9K98_RS04690 WP_000611335.1 943949..944605(-) (letA) [Escherichia coli strain CRE444]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAAGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACTAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486