Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   VT264_RS17340 Genome accession   NZ_CP143266
Coordinates   3502900..3503589 (-) Length   229 a.a.
NCBI ID   WP_196616643.1    Uniprot ID   -
Organism   Bacillus velezensis strain JBCS608     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3497900..3508589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT264_RS17305 (VT264_17305) fliW 3497991..3498422 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  VT264_RS17310 (VT264_17310) - 3498452..3499021 (-) 570 WP_024085861.1 DUF6470 family protein -
  VT264_RS17315 (VT264_17315) flgL 3499112..3500029 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  VT264_RS17320 (VT264_17320) flgK 3500041..3501558 (-) 1518 WP_024085862.1 flagellar hook-associated protein FlgK -
  VT264_RS17325 (VT264_17325) - 3501574..3502056 (-) 483 WP_024085863.1 flagellar protein FlgN -
  VT264_RS17330 (VT264_17330) flgM 3502071..3502337 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  VT264_RS17335 (VT264_17335) - 3502407..3502826 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  VT264_RS17340 (VT264_17340) comFC 3502900..3503589 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  VT264_RS17345 (VT264_17345) - 3503595..3503879 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  VT264_RS17350 (VT264_17350) comFA 3503937..3505322 (-) 1386 WP_024085865.1 DEAD/DEAH box helicase Machinery gene
  VT264_RS17355 (VT264_17355) - 3505430..3506278 (-) 849 WP_024085866.1 DegV family protein -
  VT264_RS17360 (VT264_17360) degU 3506376..3507065 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  VT264_RS17365 (VT264_17365) degS 3507142..3508305 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25259.95 Da        Isoelectric Point: 8.4880

>NTDB_id=928440 VT264_RS17340 WP_196616643.1 3502900..3503589(-) (comFC) [Bacillus velezensis strain JBCS608]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=928440 VT264_RS17340 WP_196616643.1 3502900..3503589(-) (comFC) [Bacillus velezensis strain JBCS608]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGTAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGTTTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603