Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VIN14_RS00045 Genome accession   NZ_CP143264
Coordinates   10406..10999 (+) Length   197 a.a.
NCBI ID   WP_025013653.1    Uniprot ID   -
Organism   Lacticaseibacillus casei strain LC130     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5406..15999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIN14_RS00030 (VIN14_00030) gyrA 6779..9403 (+) 2625 WP_039639773.1 DNA gyrase subunit A -
  VIN14_RS00035 (VIN14_00035) ssb 9575..9953 (+) 379 Protein_6 single-stranded DNA-binding protein -
  VIN14_RS00040 (VIN14_00040) rpsF 10080..10376 (+) 297 WP_010490297.1 30S ribosomal protein S6 -
  VIN14_RS00045 (VIN14_00045) ssb 10406..10999 (+) 594 WP_025013653.1 single-stranded DNA-binding protein Machinery gene
  VIN14_RS00050 (VIN14_00050) rpsR 11089..11325 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  VIN14_RS00055 (VIN14_00055) - 11405..11911 (-) 507 WP_025013654.1 type 1 glutamine amidotransferase domain-containing protein -
  VIN14_RS00060 (VIN14_00060) - 12269..13747 (+) 1479 WP_025013655.1 cytochrome ubiquinol oxidase subunit I -
  VIN14_RS00065 (VIN14_00065) cydB 13740..14759 (+) 1020 WP_039639770.1 cytochrome d ubiquinol oxidase subunit II -
  VIN14_RS00070 (VIN14_00070) - 14902..15096 (+) 195 WP_010490250.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21120.84 Da        Isoelectric Point: 4.9056

>NTDB_id=928350 VIN14_RS00045 WP_025013653.1 10406..10999(+) (ssb) [Lacticaseibacillus casei strain LC130]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGIEGHIQTR
SYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQQPQNPPSFGSQSAPNNAPSSNPG
QNPAAGQSQGNNGNTANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 594 bp        

>NTDB_id=928350 VIN14_RS00045 WP_025013653.1 10406..10999(+) (ssb) [Lacticaseibacillus casei strain LC130]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGCGGTACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGTGAACGGGAAACCGACTTTATCAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCAAACTTCACCAAGAAAGGCTCACTGGTCGGGATTGAAGGACACATTCAGACGCGT
TCTTACGATAATGCGCAAGGGCAGAAAGTCTATGTGACCGAAGTCGTCGTTGAGAACTTTGCATTGCTGGAATCACGGGC
AACGACACAACAACGGCCGTCCGAACCTGCGAATCCCGCTGGCCAAGGCAACCAGAATTATGGCGGTGGGCAGCAGTTTG
GTAATAACCAGCAGCCGCAAAACCCACCTAGCTTTGGTTCCCAAAGCGCCCCGAACAATGCACCATCATCGAATCCGGGC
CAAAACCCGGCAGCAGGTCAAAGCCAAGGCAACAATGGCAATACTGCTAATCCCGATCCTTTTGCCAATAATGGTAAACC
GATCGATATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.406

100

0.604
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.5

100

0.492