Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   V1209_RS07265 Genome accession   NZ_CP143255
Coordinates   1599810..1600103 (-) Length   97 a.a.
NCBI ID   WP_005598477.1    Uniprot ID   A3N205
Organism   Actinobacillus pleuropneumoniae strain ZJNH2023     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1594810..1605103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1209_RS07235 (V1209_07215) artM 1595142..1595825 (-) 684 WP_005605188.1 arginine ABC transporter permease ArtM -
  V1209_RS07240 (V1209_07220) artQ 1595825..1596496 (-) 672 WP_011848573.1 arginine ABC transporter permease ArtQ -
  V1209_RS07245 (V1209_07225) - 1596502..1597221 (-) 720 WP_011848574.1 transporter substrate-binding domain-containing protein -
  V1209_RS07250 (V1209_07230) artP 1597241..1597975 (-) 735 WP_207618123.1 arginine ABC transporter ATP-binding protein ArtP -
  V1209_RS07255 (V1209_07235) - 1598200..1598697 (-) 498 WP_005601953.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  V1209_RS07260 (V1209_07240) - 1598770..1599732 (+) 963 WP_005619672.1 calcium/sodium antiporter -
  V1209_RS07265 (V1209_07245) HI0659 1599810..1600103 (-) 294 WP_005598477.1 helix-turn-helix domain-containing protein Machinery gene
  V1209_RS07270 (V1209_07250) - 1600084..1600455 (-) 372 WP_005619674.1 type II toxin-antitoxin system RelE/ParE family toxin -
  V1209_RS07275 (V1209_07255) - 1600649..1602400 (+) 1752 WP_005601957.1 protein-disulfide reductase DsbD -
  V1209_RS07280 (V1209_07260) - 1602458..1603027 (+) 570 WP_005601959.1 elongation factor P hydroxylase -
  V1209_RS07285 (V1209_07265) rsmI 1603071..1603925 (-) 855 WP_009874917.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10935.81 Da        Isoelectric Point: 10.3120

>NTDB_id=928291 V1209_RS07265 WP_005598477.1 1599810..1600103(-) (HI0659) [Actinobacillus pleuropneumoniae strain ZJNH2023]
MSPIGSSWTSFEQEIFDESEIAETQFRIRLILEIIETRQQLGISQRKLEKLSGVKQSMIARVEKGSVNPSLATVLKLLVP
LGKTLQIVPLDKNKTVR

Nucleotide


Download         Length: 294 bp        

>NTDB_id=928291 V1209_RS07265 WP_005598477.1 1599810..1600103(-) (HI0659) [Actinobacillus pleuropneumoniae strain ZJNH2023]
ATGAGCCCTATTGGTTCTAGTTGGACATCGTTTGAACAAGAAATTTTTGACGAGTCGGAAATAGCGGAAACTCAGTTTCG
CATACGACTTATTTTAGAAATCATTGAAACCCGTCAGCAGCTCGGTATTTCTCAACGAAAATTGGAGAAATTAAGCGGCG
TAAAACAATCTATGATTGCTCGGGTAGAAAAAGGCTCGGTTAATCCGTCGTTGGCGACGGTATTAAAGTTGCTTGTGCCG
TTGGGGAAAACTTTACAAATCGTACCGTTAGATAAAAACAAAACGGTACGTTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(35-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N205

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

66.667

92.784

0.619