Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   AB8O64_RS20445 Genome accession   NZ_CP166299
Coordinates   4497241..4498656 (-) Length   471 a.a.
NCBI ID   WP_184739292.1    Uniprot ID   A0A7W7LHB5
Organism   Streptomyces sp. QH1-20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4492241..4503656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8O64_RS20420 (AB8O64_20435) - 4492953..4493615 (+) 663 WP_370420497.1 response regulator -
  AB8O64_RS20425 (AB8O64_20440) - 4493700..4494179 (+) 480 WP_370420498.1 pyridoxamine 5'-phosphate oxidase family protein -
  AB8O64_RS20430 (AB8O64_20445) - 4494233..4494820 (-) 588 WP_370420499.1 phosphatase PAP2 family protein -
  AB8O64_RS20435 (AB8O64_20450) - 4495036..4495857 (+) 822 WP_370420500.1 hypothetical protein -
  AB8O64_RS20440 (AB8O64_20455) disA 4495990..4497114 (-) 1125 WP_184739290.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  AB8O64_RS20445 (AB8O64_20460) radA/sms 4497241..4498656 (-) 1416 WP_184739292.1 DNA repair protein RadA Machinery gene
  AB8O64_RS20450 (AB8O64_20465) - 4498889..4500493 (+) 1605 WP_361934923.1 sigma-70 family RNA polymerase sigma factor -
  AB8O64_RS20455 (AB8O64_20470) - 4500573..4501433 (-) 861 WP_370420502.1 hypothetical protein -
  AB8O64_RS20460 (AB8O64_20475) - 4501478..4502410 (+) 933 WP_370420504.1 Ppx/GppA family phosphatase -
  AB8O64_RS20465 (AB8O64_20480) - 4502434..4503258 (+) 825 WP_130878251.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 49488.59 Da        Isoelectric Point: 7.7051

>NTDB_id=928174 AB8O64_RS20445 WP_184739292.1 4497241..4498656(-) (radA/sms) [Streptomyces sp. QH1-20]
MAARTARSSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTSAALPIGQVDGRQATARSTGVD
ELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRMRADRIGALSDHLYLAAETDLSA
VLGHLDSVKPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVL
SFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDS
QIPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDSPLPKNLVAIGEV
GLAGEVRRVTGVQRRLAEAARLGFTHALVPSDPGKIPAGMKVLEVADIGDALRVLPKRVRRESRREADADA

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=928174 AB8O64_RS20445 WP_184739292.1 4497241..4498656(-) (radA/sms) [Streptomyces sp. QH1-20]
ATGGCTGCCCGTACCGCTCGCTCGTCCGCCAAGGACCGGCCCTCCTACCGCTGCACCGAGTGCGGCTGGACCACTGCCAA
GTGGCTCGGCCGCTGCCCGGAGTGCCAGGCGTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCCGTGCGCACGACGGCGC
CCGGCCGGGTGACCTCCGCCGCGCTGCCCATCGGCCAGGTCGACGGCCGGCAGGCCACCGCGCGCAGCACCGGAGTGGAC
GAGCTGGACCGCGTGCTGGGCGGCGGGCTGGTGCCCGGCGCGGTGGTGCTGCTCGCGGGCGAGCCCGGCGTCGGCAAGTC
CACCCTGCTGCTGGACGTCGCGGCGAAGGCCGCGTCCGACGAGCACCGCACGCTGTATGTGACGGGCGAGGAGTCCGCGA
GCCAGGTGCGGATGCGCGCCGACCGCATCGGCGCGCTCTCCGACCACCTCTATCTCGCCGCCGAGACCGATCTGTCCGCC
GTCCTCGGCCATCTCGACTCCGTGAAGCCCTCCCTCCTGATCATGGACTCGGTGCAGACCGTGGCCTCCCCCGAGATCGA
CGGCGCGCCGGGCGGGATGGCTCAGGTGCGCGAGGTGGCGGGTGCCCTGATCCGGGCCTCCAAGGAGCGCGGCATGGCCA
CCCTCCTGGTCGGCCATGTGACCAAGGACGGCGCGATCGCGGGTCCCCGGCTGCTGGAGCACCTGGTCGATGTCGTGCTG
AGCTTCGAGGGCGACCGGCACGCCCGGCTGCGCCTGGTCCGCGGCGTGAAGAACCGCTACGGCGCCACCGACGAGGTCGG
CTGCTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCAGCGGGCTCTTCCTGACCCGGCGCGCCGAGCCCG
TTCCCGGCACCTGCCTGACGGTCACCCTGGAGGGCCGCCGCCCGCTGGTGGCCGAGGTGCAGGCCCTGACGGTCGACTCG
CAGATCCCCTCGCCCCGCCGCACCACCTCCGGTCTGGAGACCTCGCGGGTGTCGATGATGCTGGCCGTGCTGGAGCAGCG
CGGCCGGATCAGCGCCCTCGGCAAGCGCGACATCTACAGCGCCACCGTCGGCGGTGTGAAGCTCTCCGAGCCCGCCGCCG
ACCTCGCCATCGCGCTCGCCCTGGCCAGCGCCGCCAGCGACTCCCCGCTGCCGAAGAACCTGGTGGCCATCGGTGAGGTG
GGGCTCGCGGGCGAGGTCCGGCGTGTCACGGGCGTGCAGCGCCGCCTGGCCGAAGCCGCCCGCCTCGGTTTCACCCACGC
CCTCGTGCCCTCCGACCCGGGGAAGATCCCGGCCGGTATGAAGGTTTTGGAGGTCGCGGACATAGGTGATGCGCTTCGGG
TGCTGCCCAAGCGGGTACGCCGGGAGAGCCGGCGGGAGGCCGATGCGGACGCCTGA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

AAA domain (AAA_25)

(84-224)

Subunit ChlI of Mg-chelatase (ChlI)

(371-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W7LHB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.488

96.178

0.418
  radA Streptococcus mitis NCTC 12261

42.826

96.178

0.412
  radA Streptococcus mitis SK321

42.826

96.178

0.412
  radA Streptococcus pneumoniae Rx1

42.889

95.541

0.41
  radA Streptococcus pneumoniae TIGR4

42.889

95.541

0.41
  radA Streptococcus pneumoniae D39

42.889

95.541

0.41
  radA Streptococcus pneumoniae R6

42.889

95.541

0.41