Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | VOW57_RS06035 | Genome accession | NZ_CP143084 |
| Coordinates | 1221727..1222158 (+) | Length | 143 a.a. |
| NCBI ID | WP_119182905.1 | Uniprot ID | - |
| Organism | Lacticaseibacillus paracasei strain LPC100 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1216727..1227158
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VOW57_RS05980 (VOW57_05980) | - | 1217100..1217807 (-) | 708 | WP_119182913.1 | hypothetical protein | - |
| VOW57_RS05985 (VOW57_05985) | - | 1217804..1218034 (-) | 231 | WP_100223706.1 | helix-turn-helix transcriptional regulator | - |
| VOW57_RS05990 (VOW57_05990) | - | 1218175..1218381 (+) | 207 | WP_032954501.1 | helix-turn-helix transcriptional regulator | - |
| VOW57_RS05995 (VOW57_05995) | - | 1218381..1218728 (+) | 348 | WP_119182912.1 | hypothetical protein | - |
| VOW57_RS06000 (VOW57_06000) | - | 1218721..1219446 (+) | 726 | WP_260186218.1 | antA/AntB antirepressor family protein | - |
| VOW57_RS06005 (VOW57_06005) | - | 1219512..1220060 (+) | 549 | WP_119182910.1 | hypothetical protein | - |
| VOW57_RS06010 (VOW57_06010) | - | 1220039..1220269 (+) | 231 | WP_015764912.1 | helix-turn-helix domain-containing protein | - |
| VOW57_RS06015 (VOW57_06015) | - | 1220273..1220401 (+) | 129 | WP_119182909.1 | hypothetical protein | - |
| VOW57_RS06020 (VOW57_06020) | - | 1220413..1220640 (+) | 228 | WP_119182908.1 | hypothetical protein | - |
| VOW57_RS06025 (VOW57_06025) | - | 1220633..1221058 (+) | 426 | WP_119182907.1 | hypothetical protein | - |
| VOW57_RS06030 (VOW57_06030) | - | 1221071..1221730 (+) | 660 | WP_119182906.1 | ERF family protein | - |
| VOW57_RS06035 (VOW57_06035) | ssb | 1221727..1222158 (+) | 432 | WP_119182905.1 | single-stranded DNA-binding protein | Machinery gene |
| VOW57_RS06040 (VOW57_06040) | - | 1222228..1223022 (+) | 795 | WP_225418757.1 | hypothetical protein | - |
| VOW57_RS06045 (VOW57_06045) | - | 1223009..1223791 (+) | 783 | WP_119182904.1 | ATP-binding protein | - |
| VOW57_RS06050 (VOW57_06050) | - | 1223788..1224120 (+) | 333 | WP_003602794.1 | hypothetical protein | - |
| VOW57_RS06055 (VOW57_06055) | - | 1224117..1224395 (+) | 279 | WP_003602793.1 | hypothetical protein | - |
| VOW57_RS06060 (VOW57_06060) | - | 1224392..1224841 (+) | 450 | WP_003602792.1 | hypothetical protein | - |
| VOW57_RS06065 (VOW57_06065) | - | 1224844..1225227 (+) | 384 | WP_016376214.1 | DUF1064 domain-containing protein | - |
| VOW57_RS06070 (VOW57_06070) | - | 1225247..1225711 (+) | 465 | WP_119182903.1 | endonuclease | - |
| VOW57_RS06075 (VOW57_06075) | - | 1225723..1225986 (+) | 264 | WP_108299006.1 | hypothetical protein | - |
| VOW57_RS06080 (VOW57_06080) | - | 1225983..1226510 (+) | 528 | WP_119182902.1 | DUF1642 domain-containing protein | - |
| VOW57_RS06085 (VOW57_06085) | - | 1226500..1226676 (+) | 177 | WP_162899791.1 | hypothetical protein | - |
| VOW57_RS06090 (VOW57_06090) | - | 1226666..1226824 (+) | 159 | WP_162899790.1 | hypothetical protein | - |
| VOW57_RS06095 (VOW57_06095) | - | 1226814..1227125 (+) | 312 | WP_225418756.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 143 a.a. Molecular weight: 15980.78 Da Isoelectric Point: 8.8904
>NTDB_id=928173 VOW57_RS06035 WP_119182905.1 1221727..1222158(+) (ssb) [Lacticaseibacillus paracasei strain LPC100]
MINSVALNGRLTRDVDLRYTTSGIAVGQFTLAVDRRFKSKSGNRETDFISCQIWRKSAENLANYAHKGSLIGIEGRIQTR
TYDNKQGQKIYITEVIAENFSLLEPKPAQQTDNARVSSNRDTQGTTNQPSGKPIDVNDDDLPF
MINSVALNGRLTRDVDLRYTTSGIAVGQFTLAVDRRFKSKSGNRETDFISCQIWRKSAENLANYAHKGSLIGIEGRIQTR
TYDNKQGQKIYITEVIAENFSLLEPKPAQQTDNARVSSNRDTQGTTNQPSGKPIDVNDDDLPF
Nucleotide
Download Length: 432 bp
>NTDB_id=928173 VOW57_RS06035 WP_119182905.1 1221727..1222158(+) (ssb) [Lacticaseibacillus paracasei strain LPC100]
GTGATCAATTCAGTTGCTCTTAACGGAAGACTTACAAGAGACGTCGACTTGCGTTACACCACTAGCGGAATTGCAGTTGG
GCAATTCACCTTGGCTGTTGACAGGCGTTTTAAAAGCAAAAGTGGCAATCGCGAGACAGACTTCATTAGCTGTCAGATAT
GGCGAAAATCAGCCGAAAATCTAGCAAACTACGCACACAAAGGTTCGTTGATCGGCATTGAAGGACGCATTCAAACCCGC
ACCTATGACAACAAGCAAGGGCAAAAAATTTATATCACAGAAGTGATTGCTGAAAACTTTAGTTTGTTAGAGCCGAAGCC
AGCACAGCAGACAGATAATGCTAGAGTGTCAAGCAACCGGGACACGCAAGGCACAACGAATCAGCCTAGCGGGAAACCGA
TTGATGTTAACGATGACGATCTTCCATTTTAA
GTGATCAATTCAGTTGCTCTTAACGGAAGACTTACAAGAGACGTCGACTTGCGTTACACCACTAGCGGAATTGCAGTTGG
GCAATTCACCTTGGCTGTTGACAGGCGTTTTAAAAGCAAAAGTGGCAATCGCGAGACAGACTTCATTAGCTGTCAGATAT
GGCGAAAATCAGCCGAAAATCTAGCAAACTACGCACACAAAGGTTCGTTGATCGGCATTGAAGGACGCATTCAAACCCGC
ACCTATGACAACAAGCAAGGGCAAAAAATTTATATCACAGAAGTGATTGCTGAAAACTTTAGTTTGTTAGAGCCGAAGCC
AGCACAGCAGACAGATAATGCTAGAGTGTCAAGCAACCGGGACACGCAAGGCACAACGAATCAGCCTAGCGGGAAACCGA
TTGATGTTAACGATGACGATCTTCCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50 |
100 |
0.601 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
46.512 |
100 |
0.559 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
53.636 |
76.923 |
0.413 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
39.86 |
100 |
0.399 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
49.524 |
73.427 |
0.364 |