Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   VP466_RS04860 Genome accession   NZ_CP142895
Coordinates   1031333..1031815 (+) Length   160 a.a.
NCBI ID   WP_001046420.1    Uniprot ID   A0A7U3Y2Y6
Organism   Acinetobacter baumannii strain B20AB10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1026333..1036815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP466_RS04850 (VP466_04855) pilX 1026636..1027454 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  VP466_RS04855 (VP466_04860) pilY1 1027466..1031320 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  VP466_RS04860 (VP466_04865) pilY2 1031333..1031815 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  VP466_RS04865 (VP466_04870) pilE 1031812..1032237 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene
  VP466_RS04870 (VP466_04875) rpsP 1032384..1032635 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  VP466_RS04875 (VP466_04880) rimM 1032655..1033203 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  VP466_RS04880 (VP466_04885) trmD 1033249..1033989 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  VP466_RS04885 (VP466_04890) rplS 1034198..1034566 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  VP466_RS04890 (VP466_04895) - 1034619..1035560 (-) 942 WP_085916958.1 lipase family alpha/beta hydrolase -
  VP466_RS04895 (VP466_04900) - 1035675..1036709 (-) 1035 WP_001189447.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17548.77 Da        Isoelectric Point: 8.4817

>NTDB_id=927571 VP466_RS04860 WP_001046420.1 1031333..1031815(+) (pilY2) [Acinetobacter baumannii strain B20AB10]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSASNGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=927571 VP466_RS04860 WP_001046420.1 1031333..1031815(+) (pilY2) [Acinetobacter baumannii strain B20AB10]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTTCTAATGGTCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3Y2Y6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

97.5

100

0.975
  comE Acinetobacter baylyi ADP1

40.116

100

0.431