Detailed information NTG0927492

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: VXM67_RS23425
• Genome accession: NZ_CP142890
• Coordinates: 5130862..5131728 (+)
• Length: 288 a.a.
• NCBI ID: WP_023382439.1
• Uniprot ID: A0A964GN15
• Organism: Pseudomonas sp. Rh2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5125862..5136728

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VXM67_RS23395 (VXM67_23355)	-	5126038..5126298 (-)	261	WP_069943425.1	AlpA family transcriptional regulator	-
VXM67_RS23400 (VXM67_23360)	-	5126368..5127156 (-)	789	WP_141729078.1	hypothetical protein	-
VXM67_RS23405 (VXM67_23365)	-	5127428..5128717 (-)	1290	WP_270149557.1	integrase arm-type DNA-binding domain-containing protein	-
VXM67_RS23415 (VXM67_23375)	-	5129026..5129436 (-)	411	WP_023382437.1	pilin	-
VXM67_RS23420 (VXM67_23380)	-	5129651..5130859 (+)	1209	WP_027907763.1	type II secretion system F family protein	-
VXM67_RS23425 (VXM67_23385)	pilD	5130862..5131728 (+)	867	WP_023382439.1	A24 family peptidase	Machinery gene
VXM67_RS23430 (VXM67_23390)	coaE	5131728..5132351 (+)	624	WP_367237406.1	dephospho-CoA kinase	-
VXM67_RS23435 (VXM67_23395)	yacG	5132348..5132548 (+)	201	WP_023382441.1	DNA gyrase inhibitor YacG	-
VXM67_RS23440 (VXM67_23400)	-	5132684..5133367 (-)	684	WP_023382442.1	energy-coupling factor ABC transporter permease	-
VXM67_RS23445 (VXM67_23405)	-	5133473..5134102 (+)	630	WP_023382443.1	DUF1780 domain-containing protein	-
VXM67_RS23450 (VXM67_23410)	-	5134235..5134408 (+)	174	WP_023382444.1	DUF3094 family protein	-
VXM67_RS23455 (VXM67_23415)	-	5134493..5135788 (+)	1296	WP_023382445.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31781.18 Da
• Isoelectric Point: 8.1737

>NTDB_id=927492 VXM67_RS23425 WP_023382439.1 5130862..5131728(+) (pilD) [Pseudomonas sp. Rh2]
MTLWTFLAAQPAYLMTLAALLGLLVGSFLNVLVHRLPIMLERQWQREAQQVLGLPTSVHERFDLCLPASRCPGCGHPIRA
WENIPVLSYLALRGRCSACKCRISPRYPLVELACAAVSLVVAWHGGSAAQLLLLLLLTWCLLALSLIDIEHQLLPDVLVL
PMLWLGLIANAFHTFVPLSHALWGAIAGYLCLWSVYWVFKLLTGKEGMGYGDFKLLALIGAWGGWQVLPLTLLLSSVLGV
LVGLCLLRVRRQSLSTTLPFGPYLAIAGWIALLWGDEIYASYMQLLGL

Nucleotide

• Length: 867 bp

>NTDB_id=927492 VXM67_RS23425 WP_023382439.1 5130862..5131728(+) (pilD) [Pseudomonas sp. Rh2]
ATGACTTTATGGACTTTCCTGGCTGCGCAGCCGGCTTACCTGATGACCTTGGCCGCCCTCCTGGGGTTGCTGGTCGGCAG
CTTTCTGAACGTGTTGGTGCACCGCCTGCCGATCATGCTCGAACGCCAATGGCAGCGCGAAGCACAGCAGGTGCTGGGGC
TGCCGACCTCGGTGCATGAACGCTTCGACCTGTGCCTGCCGGCCTCCCGCTGCCCGGGCTGCGGGCACCCGATTCGTGCC
TGGGAAAACATCCCGGTGCTGAGTTACCTGGCCCTGCGTGGGCGCTGCTCGGCGTGCAAGTGCCGCATCAGCCCGCGTTA
TCCACTGGTGGAGCTGGCGTGCGCGGCCGTTTCGCTGGTAGTCGCGTGGCATGGCGGCAGTGCCGCGCAGCTGCTGTTGC
TACTGTTGCTCACCTGGTGCCTGCTGGCCTTGAGCCTGATCGATATCGAACACCAGTTGCTGCCCGACGTGCTGGTGCTG
CCAATGCTGTGGCTAGGCTTGATCGCCAATGCCTTCCACACCTTCGTCCCCCTGAGCCATGCGCTGTGGGGCGCGATTGC
GGGTTACCTCTGCCTGTGGAGCGTGTACTGGGTGTTCAAGCTGCTGACCGGCAAGGAGGGCATGGGCTATGGGGACTTCA
AGCTGCTGGCGTTGATCGGCGCCTGGGGCGGGTGGCAGGTGCTGCCGCTGACCTTGCTGTTGTCATCGGTGCTGGGGGTG
CTGGTTGGCCTGTGCCTGCTGCGTGTGCGTCGGCAATCGCTGAGTACGACGTTGCCGTTTGGGCCTTATCTGGCCATTGC
AGGGTGGATTGCGTTGCTCTGGGGTGATGAAATATACGCCTCTTACATGCAACTACTGGGACTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.945	94.792	0.521
pilD	Acinetobacter baumannii D1279779	51.493	93.056	0.479
pilD	Vibrio campbellii strain DS40M4	49.64	96.528	0.479
pilD	Acinetobacter nosocomialis M2	50.746	93.056	0.472
pilD	Neisseria gonorrhoeae MS11	47.955	93.403	0.448