Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   VXJ98_RS11270 Genome accession   NZ_CP142855
Coordinates   2256111..2257739 (+) Length   542 a.a.
NCBI ID   WP_017175146.1    Uniprot ID   -
Organism   Staphylococcus hominis strain Sh8213     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2251111..2262739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXJ98_RS11245 (VXJ98_11245) - 2252586..2252912 (-) 327 WP_000391495.1 ArsR/SmtB family transcription factor -
  VXJ98_RS11250 (VXJ98_11250) - 2253119..2253478 (+) 360 WP_017175149.1 hypothetical protein -
  VXJ98_RS11255 (VXJ98_11255) - 2253590..2253928 (-) 339 Protein_2170 recombinase family protein -
  VXJ98_RS11260 (VXJ98_11260) - 2253937..2254566 (+) 630 Protein_2171 hypothetical protein -
  VXJ98_RS11265 (VXJ98_11265) ccrA 2254753..2256114 (+) 1362 WP_002473153.1 cassette chromosome recombinase CcrA Machinery gene
  VXJ98_RS11270 (VXJ98_11270) ccrB 2256111..2257739 (+) 1629 WP_017175146.1 cassette chromosome recombinase CcrB Machinery gene
  VXJ98_RS11275 (VXJ98_11275) - 2258242..2258592 (+) 351 WP_049436158.1 SAUGI family uracil-DNA glycosylase inhibitor -
  VXJ98_RS11280 (VXJ98_11280) - 2258679..2258993 (+) 315 WP_031864168.1 DUF960 family protein -
  VXJ98_RS11285 (VXJ98_11285) - 2259009..2259512 (+) 504 WP_017175359.1 DUF1643 domain-containing protein -
  VXJ98_RS11290 (VXJ98_11290) - 2259527..2259748 (+) 222 WP_029376781.1 hypothetical protein -
  VXJ98_RS12180 - 2259855..2260259 (-) 405 WP_037546737.1 restriction endonuclease subunit S -
  VXJ98_RS12185 - 2260405..2260828 (-) 424 Protein_2179 restriction endonuclease subunit S -
  VXJ98_RS11300 (VXJ98_11300) - 2260810..2261049 (-) 240 WP_049436162.1 hypothetical protein -
  VXJ98_RS11305 (VXJ98_11305) - 2261042..2261185 (-) 144 WP_017175355.1 hypothetical protein -
  VXJ98_RS11310 (VXJ98_11310) - 2261411..2262085 (-) 675 WP_001106057.1 IS6-like element IS257 family transposase -
  VXJ98_RS11315 (VXJ98_11315) - 2262143..2262454 (+) 312 Protein_2183 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62427.73 Da        Isoelectric Point: 9.5709

>NTDB_id=927433 VXJ98_RS11270 WP_017175146.1 2256111..2257739(+) (ccrB) [Staphylococcus hominis strain Sh8213]
MKQLKKKRIGLYARVSTEMQTDGYSIHGQLNQLTEYCQFQGYEVVDEYTDRGISGKTMQRPELQRMLKDANEGKLDCIMV
YKTNRLARNTSDLLNIVEELYKINVEFFSLTEKIEIASSTGKLMLQILASFAEFERNTIVENVYNGQRQRAIEGYYQGNL
PLGYDKVPDSKKELIINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYIISNPFYIGKIQFAKY
RHWSDKRRKGLNEEPIIADGKHAPIIDKALWDKVQFKRKESRKKPQVHGKGTNLLTGIVKCPKCGAAMAASNTTNTLKDG
TKKRIRYYSCSNFRNKGSKVCSANSVRADVLEKYVMDQILEIIKSKKVLKQLVEKVNEQSQIDKSSLNHDIAYKQSQCEE
IKAKMHTLTKTIEDSPDLDSVLKPTILGYQDELNQINNQIHQLERDKQAEAPHYDADMIANILQTIFKDIDKLEKSQLKS
LYLTVIDRIDIRKDEHCKKQFYVTLKLNNEIIKQLFDNHPLDEVLLSTSSLFLSQTLYITIE

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=927433 VXJ98_RS11270 WP_017175146.1 2256111..2257739(+) (ccrB) [Staphylococcus hominis strain Sh8213]
ATGAAACAACTCAAAAAGAAACGTATTGGATTATATGCACGTGTATCAACTGAAATGCAAACGGATGGTTACAGTATTCA
TGGTCAATTAAATCAACTTACAGAGTATTGTCAATTTCAAGGTTATGAAGTCGTTGATGAATATACCGATCGAGGTATAT
CGGGTAAAACAATGCAACGTCCAGAATTACAGCGTATGTTAAAAGATGCCAACGAAGGTAAATTAGATTGTATTATGGTC
TACAAAACCAATCGTTTAGCGAGAAATACCTCAGATTTGTTAAATATTGTCGAGGAATTGTATAAGATTAATGTCGAATT
TTTTAGTCTCACTGAAAAAATAGAAATTGCCAGCTCAACAGGTAAATTGATGCTCCAAATTTTAGCCAGCTTCGCAGAAT
TTGAAAGAAATACGATTGTAGAGAATGTCTACAATGGCCAAAGACAACGAGCGATTGAAGGTTATTATCAAGGTAATTTG
CCTCTAGGCTACGATAAAGTACCTGACAGTAAAAAAGAGCTCATAATCAATCAACATGAAGCGAATATTGTTAAATATAT
TTTTGAGTCATACGCTAAAGGTCATGGTTATCGTAAGATTGCGAACGCATTGAATCATAAAGGTTATGTGACTAAAAAAG
GTAAACCGTTTAGTATTTCGTCCATTACTTACATCATCTCAAACCCCTTTTACATTGGAAAGATACAGTTTGCGAAGTAT
AGACACTGGAGCGATAAAAGACGAAAAGGACTCAATGAAGAACCGATTATTGCAGATGGTAAACATGCGCCTATAATTGA
TAAAGCTTTATGGGATAAAGTACAGTTTAAACGCAAAGAAAGTCGTAAGAAACCACAAGTTCACGGTAAAGGGACAAACT
TACTGACTGGCATTGTAAAATGTCCAAAATGTGGCGCAGCAATGGCGGCAAGTAATACAACCAATACATTAAAAGATGGC
ACTAAGAAAAGAATCAGATATTACTCATGTAGTAATTTTAGAAACAAAGGTTCTAAAGTTTGTTCAGCCAATAGTGTTAG
AGCAGATGTATTAGAAAAATACGTTATGGACCAGATATTAGAAATTATTAAAAGTAAAAAGGTATTGAAACAATTGGTTG
AAAAAGTAAATGAACAAAGCCAAATAGATAAATCCTCTTTGAATCATGACATCGCTTATAAACAGTCACAATGTGAAGAA
ATCAAAGCCAAAATGCATACACTAACGAAAACAATCGAAGACTCACCTGACTTAGATAGCGTATTGAAACCAACAATACT
TGGCTACCAAGATGAATTGAATCAAATAAATAATCAAATCCATCAACTAGAACGAGATAAACAAGCGGAAGCTCCACATT
ATGATGCTGATATGATTGCCAATATACTACAAACAATATTCAAAGATATAGATAAATTAGAGAAATCTCAATTGAAATCA
CTATATCTAACAGTCATCGATCGCATTGACATAAGAAAAGATGAGCATTGTAAGAAGCAATTTTACGTTACACTCAAACT
GAATAATGAGATTATCAAACAACTATTTGATAATCATCCACTTGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTTTGT
CCCAAACATTATATATAACTATTGAATAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-154)

Ogr/Delta-like zinc finger (Ogr_Delta)

(300-355)

Recombinase (Recombinase)

(179-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

73.063

100

0.731