Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   VXJ98_RS11265 Genome accession   NZ_CP142855
Coordinates   2254753..2256114 (+) Length   453 a.a.
NCBI ID   WP_002473153.1    Uniprot ID   -
Organism   Staphylococcus hominis strain Sh8213     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2249753..2261114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXJ98_RS11240 (VXJ98_11240) - 2250331..2252256 (-) 1926 WP_017175150.1 heavy metal translocating P-type ATPase -
  VXJ98_RS11245 (VXJ98_11245) - 2252586..2252912 (-) 327 WP_000391495.1 ArsR/SmtB family transcription factor -
  VXJ98_RS11250 (VXJ98_11250) - 2253119..2253478 (+) 360 WP_017175149.1 hypothetical protein -
  VXJ98_RS11255 (VXJ98_11255) - 2253590..2253928 (-) 339 Protein_2170 recombinase family protein -
  VXJ98_RS11260 (VXJ98_11260) - 2253937..2254566 (+) 630 Protein_2171 hypothetical protein -
  VXJ98_RS11265 (VXJ98_11265) ccrA 2254753..2256114 (+) 1362 WP_002473153.1 cassette chromosome recombinase CcrA Machinery gene
  VXJ98_RS11270 (VXJ98_11270) ccrB 2256111..2257739 (+) 1629 WP_017175146.1 cassette chromosome recombinase CcrB Machinery gene
  VXJ98_RS11275 (VXJ98_11275) - 2258242..2258592 (+) 351 WP_049436158.1 SAUGI family uracil-DNA glycosylase inhibitor -
  VXJ98_RS11280 (VXJ98_11280) - 2258679..2258993 (+) 315 WP_031864168.1 DUF960 family protein -
  VXJ98_RS11285 (VXJ98_11285) - 2259009..2259512 (+) 504 WP_017175359.1 DUF1643 domain-containing protein -
  VXJ98_RS11290 (VXJ98_11290) - 2259527..2259748 (+) 222 WP_029376781.1 hypothetical protein -
  VXJ98_RS12180 - 2259855..2260259 (-) 405 WP_037546737.1 restriction endonuclease subunit S -
  VXJ98_RS12185 - 2260405..2260828 (-) 424 Protein_2179 restriction endonuclease subunit S -
  VXJ98_RS11300 (VXJ98_11300) - 2260810..2261049 (-) 240 WP_049436162.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 53261.36 Da        Isoelectric Point: 9.8753

>NTDB_id=927432 VXJ98_RS11265 WP_002473153.1 2254753..2256114(+) (ccrA) [Staphylococcus hominis strain Sh8213]
MEEAVAYVRQSTLKQQSLATQKSLIIDTAKQYGWSNVTFYDDKKTGRHTKRSGYQKMVEMITSGKCKVLCCYRLNRLHRN
LKNAIQFFEICKKNHVTIISVNDGYFDLSKEFDCFRLNILMSLAEMESNNISEQTRNGIREKAKQGKLITTHAPFGYRYR
QSHFVVHEEEAYTVKTVYRWYLQGLGYKKISQHLDKNPKLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPSIVDVDT
FEEVQQRRLNKHHKQHISENKLKKLIRCPYCQSTLTNLTIKKANHSLRYYVCPRNMNEAYHTCPFKGMNALELESKVLDT
CKKYFEEQSFHNRLNDTILKVLKQQQMKHKETHLTQAQLIEKLAQNRIDVKTFKRLSASCKSEENYPTYSTYQIDDKLKY
VIKNKITLQDIAPLIDDITITQTKQLQGIYFKNSPLNIVEQSHLITPERNEVI

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=927432 VXJ98_RS11265 WP_002473153.1 2254753..2256114(+) (ccrA) [Staphylococcus hominis strain Sh8213]
ATGGAAGAAGCCGTTGCTTACGTACGTCAAAGTACACTCAAACAACAAAGCTTAGCCACTCAGAAATCCCTCATTATAGA
CACTGCTAAGCAATATGGATGGTCCAATGTAACATTTTATGATGATAAGAAAACAGGTCGACATACAAAACGTTCGGGCT
ATCAAAAAATGGTAGAAATGATTACATCTGGAAAATGTAAAGTATTATGTTGTTATCGTCTGAATCGACTCCATCGTAAT
TTGAAAAACGCTATACAATTCTTTGAAATTTGTAAAAAGAATCATGTCACAATCATCAGTGTGAACGATGGATATTTTGA
TTTGTCTAAAGAGTTTGATTGCTTTCGCTTAAACATACTCATGAGTCTAGCAGAAATGGAGTCTAATAATATCAGTGAAC
AAACACGAAATGGAATAAGAGAAAAAGCCAAACAAGGTAAACTAATCACAACTCATGCACCTTTTGGCTATCGTTACAGA
CAAAGTCATTTTGTTGTACATGAAGAAGAAGCGTATACAGTCAAAACTGTCTATCGCTGGTACTTACAAGGTCTAGGCTA
CAAAAAGATTTCCCAACATTTAGATAAAAATCCTAAGCTTATTCCTCGTAAACCCTATCAAGTTAGAAATATTCTCTTGA
ACCCTAACTATTGCGGTCGTGTCATCAATAAGTATGGCACGTTTAATGATATCGTTCCATCTATTGTCGACGTTGATACA
TTTGAAGAAGTACAGCAACGTCGCTTGAATAAACATCATAAACAACACATTTCTGAAAACAAATTAAAGAAACTAATTAG
ATGTCCGTACTGTCAATCAACATTAACAAACTTAACGATTAAAAAAGCGAATCATTCTCTACGTTACTACGTCTGTCCTA
GAAATATGAATGAAGCCTATCATACGTGTCCATTTAAAGGTATGAATGCACTAGAACTTGAAAGTAAAGTGCTCGACACT
TGTAAAAAGTATTTTGAAGAACAATCGTTTCATAATCGACTGAATGACACAATACTCAAAGTCCTAAAACAGCAACAAAT
GAAGCATAAAGAAACCCATCTAACACAAGCACAATTGATTGAAAAGCTAGCTCAAAATCGTATTGATGTAAAAACGTTCA
AACGTTTATCTGCTAGTTGTAAAAGTGAAGAGAATTATCCTACTTATTCAACCTACCAAATCGATGACAAATTAAAATAT
GTCATAAAAAATAAAATAACTTTACAGGATATAGCACCTTTGATTGATGACATTACAATAACTCAAACTAAACAGTTACA
AGGAATCTACTTTAAAAATAGTCCACTCAATATCGTTGAACAATCACATTTAATAACTCCCGAAAGGAATGAAGTAATAT
GA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)

Recombinase (Recombinase)

(168-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

54.402

97.792

0.532
  ccrA Staphylococcus aureus N315

50.79

97.792

0.497