Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VXJ98_RS07645 Genome accession   NZ_CP142855
Coordinates   1526085..1526480 (-) Length   131 a.a.
NCBI ID   WP_017175139.1    Uniprot ID   -
Organism   Staphylococcus hominis strain Sh8213     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1521085..1531480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXJ98_RS07620 (VXJ98_07620) thiE 1521618..1522256 (-) 639 WP_017175144.1 thiamine phosphate synthase -
  VXJ98_RS07625 (VXJ98_07625) thiM 1522259..1523047 (-) 789 WP_017175143.1 hydroxyethylthiazole kinase -
  VXJ98_RS07630 (VXJ98_07630) thiD 1523040..1523861 (-) 822 WP_017175142.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  VXJ98_RS07635 (VXJ98_07635) tenA 1523854..1524543 (-) 690 WP_017175141.1 thiaminase II -
  VXJ98_RS07640 (VXJ98_07640) - 1524935..1525681 (-) 747 WP_017175140.1 transglycosylase family protein -
  VXJ98_RS07645 (VXJ98_07645) ssb 1526085..1526480 (-) 396 WP_017175139.1 single-stranded DNA-binding protein Machinery gene
  VXJ98_RS07650 (VXJ98_07650) - 1526674..1527114 (+) 441 WP_017175138.1 YwpF-like family protein -
  VXJ98_RS07655 (VXJ98_07655) fabZ 1527164..1527601 (-) 438 WP_002448673.1 3-hydroxyacyl-ACP dehydratase FabZ -
  VXJ98_RS07660 (VXJ98_07660) murA 1527629..1528894 (-) 1266 WP_017175137.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  VXJ98_RS07665 (VXJ98_07665) - 1529001..1529231 (-) 231 WP_017175136.1 DUF1146 family protein -
  VXJ98_RS07670 (VXJ98_07670) - 1529545..1529946 (-) 402 WP_002448708.1 F0F1 ATP synthase subunit epsilon -
  VXJ98_RS07675 (VXJ98_07675) atpD 1529968..1531380 (-) 1413 WP_017175135.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15148.29 Da        Isoelectric Point: 5.9389

>NTDB_id=927426 VXJ98_RS07645 WP_017175139.1 1526085..1526480(-) (ssb) [Staphylococcus hominis strain Sh8213]
MLNKIVIVGRMTKDAKIYDNEEVKIATFSVATERNYKDENDEIACDYIFCKAFGKMASNIEKYTSQGSLVGITGQMRSRK
YEKEKQTHFVTELYVETIKFMSPKLNNEKLSDSSLNTDTYPFDNLELMNIK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=927426 VXJ98_RS07645 WP_017175139.1 1526085..1526480(-) (ssb) [Staphylococcus hominis strain Sh8213]
ATGTTAAATAAGATAGTAATCGTTGGTCGTATGACTAAAGATGCAAAAATTTATGATAATGAGGAGGTGAAAATCGCAAC
GTTTAGTGTGGCTACTGAACGTAATTATAAAGATGAAAATGATGAAATAGCATGTGATTATATATTTTGTAAAGCATTTG
GTAAGATGGCCAGCAACATTGAAAAATATACTTCTCAAGGATCTTTAGTAGGTATTACTGGCCAAATGCGTTCTCGTAAA
TATGAAAAGGAAAAACAAACTCACTTTGTCACAGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATTAAATAA
TGAAAAACTCTCAGATAGCTCACTAAATACAGACACTTATCCATTTGATAATCTCGAATTAATGAATATAAAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

75.573

100

0.756
  ssb Staphylococcus aureus MW2

74.809

100

0.748