Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   VXJ98_RS03160 Genome accession   NZ_CP142855
Coordinates   632674..633258 (-) Length   194 a.a.
NCBI ID   WP_017175793.1    Uniprot ID   A0A4V2KX31
Organism   Staphylococcus hominis strain Sh8213     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 627674..638258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXJ98_RS03130 (VXJ98_03130) - 628778..630136 (+) 1359 WP_017175796.1 TrkH family potassium uptake protein -
  VXJ98_RS03135 (VXJ98_03135) - 630300..630902 (-) 603 WP_017175795.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  VXJ98_RS03140 (VXJ98_03140) - 630918..631094 (-) 177 WP_002448045.1 YkvS family protein -
  VXJ98_RS03145 (VXJ98_03145) - 631283..632272 (+) 990 WP_017175794.1 lipoate--protein ligase -
  VXJ98_RS03160 (VXJ98_03160) comK/comK1 632674..633258 (-) 585 WP_017175793.1 competence protein ComK Regulator
  VXJ98_RS03165 (VXJ98_03165) - 633466..633684 (+) 219 WP_002488353.1 IDEAL domain-containing protein -
  VXJ98_RS03170 (VXJ98_03170) - 633752..633850 (-) 99 WP_017175792.1 SAR1012 family small protein -
  VXJ98_RS03175 (VXJ98_03175) - 633939..634151 (-) 213 WP_017175791.1 TM2 domain-containing protein -
  VXJ98_RS03180 (VXJ98_03180) - 634295..634846 (+) 552 WP_017175790.1 GNAT family N-acetyltransferase -
  VXJ98_RS03185 (VXJ98_03185) - 634897..635835 (-) 939 WP_017175789.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  VXJ98_RS03190 (VXJ98_03190) - 636016..637383 (+) 1368 WP_017175788.1 isochorismate synthase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22941.26 Da        Isoelectric Point: 9.5206

>NTDB_id=927407 VXJ98_RS03160 WP_017175793.1 632674..633258(-) (comK/comK1) [Staphylococcus hominis strain Sh8213]
MTQFNKPPNTIYVIRKGDMVIRPTFDDHQQPNGSEILKFDTSREISPFKTQKIIERSCRFYGNNYLSKKAETQRIAGITS
KPPILLTPLFPTYFFPTHSDRLEENIWINMHYISDIKPLKNRKSKIIFANQEALTLNVSFHSLWHQYSNSIFYYYMIDKQ
ARMKSNNPDMPIDYEKTSLNIFEALSHYSLLEDK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=927407 VXJ98_RS03160 WP_017175793.1 632674..633258(-) (comK/comK1) [Staphylococcus hominis strain Sh8213]
ATGACTCAGTTCAATAAACCTCCTAATACGATTTATGTCATACGTAAAGGTGATATGGTGATTAGACCTACATTTGACGA
TCATCAACAACCGAACGGCTCAGAAATCCTCAAATTCGATACCTCACGAGAAATAAGTCCTTTTAAAACTCAAAAAATTA
TTGAACGATCTTGTAGATTTTATGGCAATAACTACTTAAGCAAGAAAGCTGAAACTCAACGCATTGCTGGAATAACTAGT
AAACCTCCCATCCTTCTCACACCATTGTTTCCAACTTACTTTTTCCCAACACATTCAGACCGTTTAGAAGAAAATATATG
GATTAATATGCATTATATTTCTGATATTAAGCCATTAAAAAACAGAAAGAGTAAAATTATCTTTGCAAATCAAGAAGCAC
TAACATTAAATGTATCTTTTCATAGTTTATGGCATCAATATTCTAATTCTATTTTCTATTACTATATGATTGATAAACAA
GCAAGAATGAAATCTAATAATCCAGATATGCCAATCGATTATGAAAAAACATCTTTAAATATTTTTGAGGCACTTTCACA
CTATTCTTTATTAGAAGATAAATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(11-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V2KX31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

74.457

94.845

0.706
  comK/comK1 Staphylococcus aureus N315

74.457

94.845

0.706