Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   VXJ98_RS00425 Genome accession   NZ_CP142855
Coordinates   91529..92866 (+) Length   445 a.a.
NCBI ID   WP_017176076.1    Uniprot ID   -
Organism   Staphylococcus hominis strain Sh8213     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 86529..97866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXJ98_RS00405 (VXJ98_00405) - 86893..87246 (+) 354 WP_000278595.1 PTS glucitol/sorbitol transporter subunit IIA -
  VXJ98_RS00410 (VXJ98_00410) - 87522..89105 (-) 1584 WP_017176073.1 hypothetical protein -
  VXJ98_RS00415 (VXJ98_00415) ssb 89276..89572 (+) 297 WP_017176074.1 cassette chromosome ssDNA-binding protein -
  VXJ98_RS00420 (VXJ98_00420) cch1 89572..91341 (+) 1770 WP_017176075.1 cassette chromosome replicative helicase -
  VXJ98_RS00425 (VXJ98_00425) ccrA 91529..92866 (+) 1338 WP_017176076.1 cassette chromosome recombinase CcrA Machinery gene
  VXJ98_RS00430 (VXJ98_00430) ccrB 92900..94525 (+) 1626 WP_017176077.1 cassette chromosome recombinase CcrB Machinery gene
  VXJ98_RS00435 (VXJ98_00435) - 95048..95398 (+) 351 WP_037552474.1 SAUGI family uracil-DNA glycosylase inhibitor -
  VXJ98_RS00440 (VXJ98_00440) - 95485..95799 (+) 315 WP_037552475.1 DUF960 family protein -
  VXJ98_RS00445 (VXJ98_00445) - 95817..96320 (+) 504 WP_017175385.1 DUF1643 domain-containing protein -
  VXJ98_RS00450 (VXJ98_00450) - 96334..96555 (+) 222 WP_017175386.1 hypothetical protein -
  VXJ98_RS00455 (VXJ98_00455) - 96835..97056 (+) 222 Protein_88 spermidine acetyltransferase -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 52044.68 Da        Isoelectric Point: 9.9417

>NTDB_id=927400 VXJ98_RS00425 WP_017176076.1 91529..92866(+) (ccrA) [Staphylococcus hominis strain Sh8213]
MKQAIGYLRQSTTKQQSLAAQKQTIEALAKKHNIQYITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYH
NGTFTIDTVKAPTIKAVFNYYLQGYGYKKIAQYLEADDNFINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
YEEAQVTRTQKQVKRKPSENQLKQKIKCPYCHSTLTNMTVRKPDHSLRYYVCPQNMNNARFVCEFKGINAQELETSVLAT
CQDFFQNQQLYSKINHTIQQRLKRQRDVETKTTLNHEQLIEKLAQGKIDAETFREQTQSLHQQSKPISSISAYQIRKAFQ
NIIQQRFTLNMLYPYIDEINISKNKSLAGIYFKNEPLNIVKQTMK

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=927400 VXJ98_RS00425 WP_017176076.1 91529..92866(+) (ccrA) [Staphylococcus hominis strain Sh8213]
ATGAAACAAGCAATAGGTTACTTACGACAGAGCACTACAAAGCAACAATCCTTAGCAGCACAAAAACAAACCATCGAGGC
ATTAGCCAAAAAACATAATATTCAATACATTACCTTTTATAGCGATAAGCAATCAGGACGCACTGATAAGCGGAACGGTT
ACCAACAAATTACTGAACTGATTCAACAAGGACAATGTGATGTATTATGTTGTTACAGATTAAACCGACTTCATCGCAAT
CTTAAAAATGCATTAAAACTCATGAAATTGTGTCAAAAATACCATGTCCATATCTTAAGCGTTCATGATGGCTATTTTGA
TATGGATAAAGCATTCGATCGGCTCAAACTCAATATTTTCATCAGCTTGGCCGAACTAGAATCTGATAATATAGGCGAAC
AAGTCAAAAATGGAATCAAAGAAAAAGCGAAACAAGGTAAAATGATTACAACACATGCACCCTTTGGGTATCACTATCAT
AATGGTACTTTCACGATAGACACAGTAAAAGCACCAACAATAAAAGCTGTATTCAATTATTACCTTCAAGGTTATGGTTA
TAAAAAAATTGCGCAATACTTAGAAGCTGATGATAACTTCATTAATCGCAAGCCTTATCAAGTGCGTAATATTATCCTCA
ACCCTAATTACTGTGGCCGTGTTATCAATCAATACGGACAATATGAAAACATGTTCCCAGCTATTGTCAGTACAACGATA
TACGAAGAAGCTCAAGTTACCCGAACTCAGAAACAAGTAAAACGTAAGCCGTCAGAAAATCAACTCAAACAAAAAATCAA
ATGTCCTTATTGTCATTCGACACTCACAAACATGACTGTCCGAAAACCAGATCATTCATTGCGTTACTATGTCTGTCCGC
AAAATATGAATAATGCTCGCTTTGTTTGTGAATTTAAAGGAATCAACGCACAAGAATTAGAAACAAGTGTTTTAGCGACT
TGTCAGGACTTCTTTCAAAATCAACAGCTCTATTCAAAAATAAACCATACTATTCAACAACGACTCAAAAGACAAAGAGA
TGTAGAAACTAAAACTACACTCAATCACGAGCAGCTGATAGAAAAATTAGCCCAAGGCAAAATTGATGCAGAAACGTTCA
GAGAACAAACGCAATCATTACATCAACAATCAAAACCTATATCATCAATCAGTGCGTATCAAATTCGAAAAGCTTTCCAA
AACATCATTCAACAACGTTTCACACTAAACATGTTGTACCCCTATATTGATGAAATTAATATTTCTAAAAATAAAAGCCT
CGCTGGCATCTATTTCAAAAACGAACCACTGAATATTGTAAAGCAGACTATGAAATGA

Domains

Predicted by InterproScan.

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(170-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

96.629

100

0.966
  ccrA Staphylococcus aureus N315

74.157

100

0.742