Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   VXJ98_RS00165 Genome accession   NZ_CP142855
Coordinates   36997..38622 (-) Length   541 a.a.
NCBI ID   WP_017176077.1    Uniprot ID   -
Organism   Staphylococcus hominis strain Sh8213     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 31997..43622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXJ98_RS00135 (VXJ98_00135) - 32082..33638 (+) 1557 WP_049414342.1 type I restriction-modification system subunit M -
  VXJ98_RS00140 (VXJ98_00140) - 33631..34857 (+) 1227 WP_329503308.1 restriction endonuclease subunit S -
  VXJ98_RS00145 (VXJ98_00145) - 34968..35189 (-) 222 WP_064658464.1 hypothetical protein -
  VXJ98_RS00150 (VXJ98_00150) - 35204..35707 (-) 504 WP_000849084.1 DUF1643 domain-containing protein -
  VXJ98_RS00155 (VXJ98_00155) - 35723..36037 (-) 315 WP_329503309.1 DUF960 family protein -
  VXJ98_RS00160 (VXJ98_00160) - 36124..36474 (-) 351 WP_037552474.1 SAUGI family uracil-DNA glycosylase inhibitor -
  VXJ98_RS00165 (VXJ98_00165) ccrB 36997..38622 (-) 1626 WP_017176077.1 cassette chromosome recombinase CcrB Machinery gene
  VXJ98_RS00170 (VXJ98_00170) ccrA 38656..39993 (-) 1338 WP_329503310.1 cassette chromosome recombinase CcrA Machinery gene
  VXJ98_RS00175 (VXJ98_00175) cch1 40181..41950 (-) 1770 WP_413252096.1 cassette chromosome replicative helicase -
  VXJ98_RS00180 (VXJ98_00180) ssb 41950..42240 (-) 291 WP_053018153.1 cassette chromosome ssDNA-binding protein -
  VXJ98_RS00185 (VXJ98_00185) - 42411..43481 (+) 1071 WP_053018152.1 hypothetical protein -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 62311.27 Da        Isoelectric Point: 9.7603

>NTDB_id=927398 VXJ98_RS00165 WP_017176077.1 36997..38622(-) (ccrB) [Staphylococcus hominis strain Sh8213]
MDKMKKKLVGGYIRVSTERQVEGYSIEGQITQIEQYCQFNGYELVDIYADRGISGKSMNRPELQRMLNDAKNGKLDCVMV
YKTNRLARNTSDLLTIVEELHRQNVEFFSLSERMEVKNSTGKLMLQILASFSEFERNTILENIYTGQRQRALEGYYQGNL
PLGYNNIPDNKKELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAKY
KDWNDKRRKGLNDKPVIAEGKHTPIISQSLWDKVQARKKQVSEKPQVHGKGTNILTGLISCPQCSAPMAASNTTNTLKDG
TKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVVERVNQENQVDVAALNHDIAYKQQQFDE
ISTKLKNLIQTIENNPDLTSALKPTIHQYETQLNDITNQINQLKHQQNQEKPFYDTKQIAALLQRIFQNIESMDKSQLKA
LYLTVIDRIDIRKDENHKKQFFVTLKLNNEIIKQLFNNNNLDEVLLSTSSLFLPQTLYLTI

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=927398 VXJ98_RS00165 WP_017176077.1 36997..38622(-) (ccrB) [Staphylococcus hominis strain Sh8213]
ATGGATAAAATGAAGAAAAAGCTTGTAGGAGGCTACATTCGCGTATCCACAGAGAGACAAGTAGAGGGTTATAGCATCGA
GGGACAAATTACACAAATAGAGCAATATTGCCAATTTAATGGCTATGAACTCGTTGATATATATGCAGATCGGGGTATAT
CAGGAAAATCTATGAACCGTCCTGAATTACAGCGCATGTTAAATGATGCTAAAAATGGAAAATTAGACTGTGTTATGGTT
TATAAAACAAATCGTTTGGCACGTAATACTTCCGATTTACTTACAATCGTCGAAGAACTTCATCGCCAAAATGTTGAATT
TTTTAGCTTGTCTGAACGCATGGAAGTCAAAAATTCAACAGGCAAGTTAATGCTCCAGATACTTGCAAGTTTTTCCGAAT
TTGAAAGAAATACAATTTTAGAGAACATTTACACCGGACAACGTCAAAGAGCTTTAGAGGGCTATTATCAAGGCAATCTT
CCATTAGGATATAATAACATACCTGATAATAAAAAAGAATTAATGATTAATCAACATGAAGCTAACATCGTTAAATATAT
CTTTGAATCTTATGCCAAAGGTCATGGTTATCGTAAAATAGCCAATGCACTCAATCATAAGGGTTATGTCACTAAGAAAG
GTAATCCATTTAGTATTTCAGCTGTTACTTATATTCTCTCAAACCCATTCTATATTGGTAAAATTCAATTCGCGAAATAC
AAAGATTGGAATGATAAACGACGTAAAGGATTAAACGATAAGCCAGTAATCGCTGAAGGTAAACACACGCCTATTATTAG
TCAATCATTATGGGATAAAGTGCAAGCACGTAAGAAACAAGTAAGTGAAAAACCACAAGTCCATGGTAAAGGAACCAATA
TTTTAACTGGATTAATTTCGTGTCCCCAATGTTCTGCACCTATGGCTGCGAGTAACACCACAAACACACTTAAAGATGGC
ACTAAAAAACGTATTCGTTACTATTCGTGTAGTAATTTTCGAAATAAAGGCTCAAAGGTATGTTCTGCGAATAGTGTTAG
AGCCGATGTCATTGAAAAATATGTTATGGACCAAATACTTGAAATTGTCAAAAGTGATAAAGTTCTCAAACAAGTTGTCG
AACGTGTCAATCAAGAGAATCAAGTCGATGTAGCTGCACTTAACCATGATATTGCTTATAAACAACAACAATTTGATGAA
ATTAGCACTAAACTTAAAAATCTAATTCAAACCATCGAAAACAATCCAGACTTAACATCTGCACTCAAACCAACCATTCA
TCAATATGAAACACAACTGAATGATATCACAAACCAAATTAATCAACTCAAGCACCAACAAAATCAAGAGAAACCATTTT
ATGATACTAAACAAATCGCTGCTTTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAGCTCAAAGCT
TTGTACCTAACGGTTATTGACCGTATTGACATTCGTAAAGATGAGAATCATAAAAAGCAATTCTTTGTTACACTAAAACT
TAATAATGAAATTATTAAACAACTTTTCAATAATAATAATCTAGACGAAGTGCTTCTCAGCACTTCGTCTTTATTTTTGC
CACAAACCCTATATCTTACTATTTAG

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-154)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-355)

Recombinase (Recombinase)

(179-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

80.443

100

0.806