Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VJ374_RS15905 Genome accession   NZ_CP142850
Coordinates   3052266..3052784 (-) Length   172 a.a.
NCBI ID   WP_023469850.1    Uniprot ID   -
Organism   Exiguobacterium sp. 9-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3047266..3057784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VJ374_RS15885 (VJ374_15885) dnaB 3048059..3049411 (-) 1353 WP_023469846.1 replicative DNA helicase -
  VJ374_RS15890 (VJ374_15890) rplI 3049431..3049874 (-) 444 WP_023469847.1 50S ribosomal protein L9 -
  VJ374_RS15895 (VJ374_15895) - 3049871..3051856 (-) 1986 WP_035411741.1 DHH family phosphoesterase -
  VJ374_RS15900 (VJ374_15900) rpsR 3051991..3052221 (-) 231 WP_023469849.1 30S ribosomal protein S18 -
  VJ374_RS15905 (VJ374_15905) ssb 3052266..3052784 (-) 519 WP_023469850.1 single-stranded DNA-binding protein Machinery gene
  VJ374_RS15910 (VJ374_15910) rpsF 3052808..3053095 (-) 288 WP_035411738.1 30S ribosomal protein S6 -
  VJ374_RS15915 (VJ374_15915) ychF 3053216..3054316 (-) 1101 WP_035411737.1 redox-regulated ATPase YchF -
  VJ374_RS15920 (VJ374_15920) - 3054546..3054734 (-) 189 WP_023469853.1 DUF951 domain-containing protein -
  VJ374_RS15925 (VJ374_15925) - 3054706..3055635 (-) 930 WP_056064622.1 mechanosensitive ion channel family protein -
  VJ374_RS15930 (VJ374_15930) yyaC 3055818..3056435 (+) 618 WP_035412220.1 spore protease YyaC -
  VJ374_RS15935 (VJ374_15935) - 3056473..3057237 (-) 765 WP_329469652.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18544.19 Da        Isoelectric Point: 4.9901

>NTDB_id=927376 VJ374_RS15905 WP_023469850.1 3052266..3052784(-) (ssb) [Exiguobacterium sp. 9-2]
MINRVVLVGRLTRDPEMRYTQSGIAVTRFTLACDRPFTGQDGKREADFIDCVVWRKQAENVAQYLKKGSLAGVEGRLQIS
SYDDKEGQRRYRAEVVADSVRFLESRNASRSSDGSEGYASSTGGNGNAAGWGSQQQQNNSSSPAPASSNSGFGADPFSGG
SSIDLSDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=927376 VJ374_RS15905 WP_023469850.1 3052266..3052784(-) (ssb) [Exiguobacterium sp. 9-2]
ATGATTAACCGCGTCGTTTTAGTCGGTCGGTTAACTCGTGACCCGGAAATGCGTTATACGCAGAGCGGGATTGCGGTAAC
GCGATTCACACTCGCATGTGACCGTCCTTTCACAGGGCAAGATGGGAAGCGAGAAGCTGATTTCATCGATTGCGTCGTTT
GGCGCAAGCAAGCAGAGAACGTTGCTCAGTATTTGAAGAAAGGTAGTCTTGCTGGTGTAGAGGGTCGCCTCCAGATTAGC
AGCTACGACGATAAAGAAGGGCAACGCCGTTATCGTGCGGAAGTCGTCGCTGATAGCGTCCGCTTCCTTGAGTCACGTAA
CGCGAGCCGTTCTTCGGATGGTAGCGAAGGCTACGCTTCATCAACTGGTGGAAACGGGAATGCTGCAGGATGGGGTTCAC
AGCAACAGCAGAACAACTCTTCCTCGCCAGCACCCGCTTCATCGAATTCGGGCTTCGGCGCTGATCCGTTCAGCGGCGGT
AGTTCGATCGACCTTTCAGACGACGATCTCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

53.409

100

0.547
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.222

100

0.547