Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VW926_RS09460 Genome accession   NZ_CP142824
Coordinates   1989342..1989908 (+) Length   188 a.a.
NCBI ID   WP_002364599.1    Uniprot ID   A0A1B4XKB5
Organism   Enterococcus faecalis strain CF3A-253     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1984342..1994908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VW926_RS09450 (VW926_09450) gyrA 1986319..1988820 (+) 2502 WP_263700153.1 DNA gyrase subunit A -
  VW926_RS09455 (VW926_09455) rpsF 1988995..1989297 (+) 303 WP_002356019.1 30S ribosomal protein S6 -
  VW926_RS09460 (VW926_09460) ssb 1989342..1989908 (+) 567 WP_002364599.1 single-stranded DNA-binding protein Machinery gene
  VW926_RS09465 (VW926_09465) rpsR 1989934..1990173 (+) 240 WP_002356021.1 30S ribosomal protein S18 -
  VW926_RS09470 (VW926_09470) - 1990330..1992354 (+) 2025 WP_002385477.1 DHH family phosphoesterase -
  VW926_RS09475 (VW926_09475) rplI 1992360..1992812 (+) 453 WP_308946221.1 50S ribosomal protein L9 -
  VW926_RS09480 (VW926_09480) dnaB 1993085..1994452 (+) 1368 WP_002381331.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20574.18 Da        Isoelectric Point: 4.6010

>NTDB_id=927150 VW926_RS09460 WP_002364599.1 1989342..1989908(+) (ssb) [Enterococcus faecalis strain CF3A-253]
MINNVVLVGRLTKDPDLRYTASGSAVATFTLAVNRNFTNQNGDREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYENQQGQRVYVTEVVCENFQLLESRSASEQRGTGGGSFNNNENGYQSQNRSFGNNNAGSGFNNNNNSFNPSSSQSQNNN
GMPDFDKDSDPFGGSGSSIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=927150 VW926_RS09460 WP_002364599.1 1989342..1989908(+) (ssb) [Enterococcus faecalis strain CF3A-253]
ATGATTAATAACGTTGTATTAGTCGGAAGATTGACAAAAGATCCTGACTTACGTTACACCGCTAGTGGTTCAGCTGTTGC
GACCTTTACACTTGCTGTAAACCGTAACTTTACGAATCAAAATGGTGACCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGTAAACCCGCAGAAACAATGGCTAATTATGCCCGTAAAGGTACATTATTAGGTGTTGTCGGAAGAATTCAAACTCGT
AACTACGAGAACCAACAAGGTCAACGTGTCTACGTAACTGAAGTGGTTTGTGAAAACTTCCAATTGTTAGAATCTCGTTC
TGCTTCAGAACAAAGAGGAACTGGCGGCGGTAGCTTTAATAACAACGAAAATGGTTATCAATCACAAAATCGTAGCTTTG
GTAATAACAATGCCGGTTCTGGATTTAATAACAACAACAATAGTTTCAATCCATCATCTTCTCAGTCGCAAAACAATAAC
GGTATGCCTGATTTCGATAAAGATTCTGATCCATTTGGTGGCTCAGGTTCATCTATCGACATTTCAGATGATGATTTACC
ATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B4XKB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.638

100

0.606
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.85

100

0.543