Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   AB6W33_RS07025 Genome accession   NZ_CP163561
Coordinates   1320990..1322771 (-) Length   593 a.a.
NCBI ID   WP_001003961.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBS-B4009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1315990..1327771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6W33_RS07005 (AB6W33_06995) - 1316261..1316845 (-) 585 WP_000130593.1 uracil-DNA glycosylase family protein -
  AB6W33_RS07010 (AB6W33_07000) pepV 1316942..1318348 (-) 1407 WP_000150956.1 dipeptidase PepV -
  AB6W33_RS07015 (AB6W33_07005) - 1318395..1318997 (-) 603 WP_000670191.1 nitroreductase family protein -
  AB6W33_RS07020 (AB6W33_07010) - 1319167..1320948 (+) 1782 Protein_1305 glycerophosphoryl diester phosphodiesterase membrane domain-containing protein -
  AB6W33_RS07025 (AB6W33_07015) uvrC 1320990..1322771 (-) 1782 WP_001003961.1 excinuclease ABC subunit UvrC Machinery gene
  AB6W33_RS07030 (AB6W33_07020) - 1322930..1323697 (+) 768 WP_000567584.1 epoxyqueuosine reductase QueH -
  AB6W33_RS07035 (AB6W33_07025) - 1323756..1325096 (-) 1341 WP_000285038.1 MATE family efflux transporter -
  AB6W33_RS07040 (AB6W33_07030) - 1325196..1325612 (-) 417 WP_000245056.1 VOC family protein -
  AB6W33_RS07045 (AB6W33_07035) - 1325616..1326113 (-) 498 WP_000582587.1 hypothetical protein -
  AB6W33_RS07050 (AB6W33_07040) - 1326335..1326931 (+) 597 WP_000162276.1 Ltp family lipoprotein -

Sequence

Protein


Download         Length: 593 a.a.        Molecular weight: 68414.91 Da        Isoelectric Point: 9.4731

>NTDB_id=926812 AB6W33_RS07025 WP_001003961.1 1320990..1322771(-) (uvrC) [Streptococcus agalactiae strain GBS-B4009]
MNELIKHKLELLPDSPGCYLHKDKNGTIIYVGKAKNLKNRVRSYFHGSHNTKTELLVSEIEDFEYIVTTSNTEALLLEIN
LIQENMPKYNIRLKDDKSYPYIKITNERYPHLMITRQVKKSDGTYFGPYPDSGAATEIKRLLDRLFPFKKCTNPANKVCF
YYHLGQCNAHTVCQTNKAYWDSLREDVKQFLNGKDNKIVNGLTEKMKSAAMTMEFERAAEYRDLIEAISLLRTKQRVIHQ
DMKDRDVFGYFVDKGWMCIQVFFVRNGKLIQRDVNMFPYYNEPEEDFLTYIGQFYQDTKHFLPKEVFIPQDIDAKSVETI
VGCKIVKPQRGEKKQLVNLAIKNARVSLQQKFDLLEKDIRKTHGAIENLGNLLNIPKPVRIEAFDNSNIQGTSPVAAMVV
FVNGKPSKKDYRKFKIKTVIGPDDYASMREVIHRRYSRVLKDGLTPPDLIVIDGGQGQVNIARDVIENQFGLAIPIAGLQ
KNDKHQTHELLFGDPLEVVELPRNSEEFFLLHRIQDEVHRFAITFHRQLRSKNSFSSKLDGITGLGPKRKQLLMKHFKSL
PNIQKAEIEDIIMCGIPRTVAESLRDSLNDPPK

Nucleotide


Download         Length: 1782 bp        

>NTDB_id=926812 AB6W33_RS07025 WP_001003961.1 1320990..1322771(-) (uvrC) [Streptococcus agalactiae strain GBS-B4009]
ATGAATGAACTGATTAAACATAAGCTAGAATTGTTACCAGACAGTCCTGGTTGTTACCTTCATAAAGATAAGAATGGGAC
AATTATCTATGTAGGTAAGGCTAAAAATCTTAAGAATCGTGTGAGAAGTTATTTTCATGGGAGTCATAATACTAAGACAG
AACTTTTGGTCTCTGAGATTGAAGACTTTGAATACATTGTGACAACATCTAATACCGAAGCTCTATTATTGGAAATTAAT
TTAATCCAAGAAAATATGCCGAAGTATAATATTCGATTGAAAGATGATAAGTCTTACCCATATATCAAAATAACAAATGA
ACGTTATCCTCATCTTATGATTACACGTCAAGTAAAAAAATCAGATGGCACTTATTTTGGACCTTATCCGGATTCTGGGG
CAGCAACTGAGATTAAGCGGTTACTAGATAGGCTCTTTCCTTTTAAGAAATGTACTAATCCAGCAAATAAAGTATGCTTT
TATTATCATTTAGGGCAATGCAATGCACATACAGTTTGTCAAACTAATAAAGCTTATTGGGATAGTCTGAGAGAAGATGT
AAAACAGTTTCTTAATGGTAAAGATAATAAAATTGTTAACGGATTAACTGAAAAAATGAAGAGCGCTGCTATGACTATGG
AATTTGAGCGTGCGGCTGAGTATCGAGATTTGATCGAAGCAATTAGTTTGTTGCGTACTAAGCAGCGTGTTATTCATCAA
GATATGAAGGATAGAGATGTTTTTGGTTATTTTGTTGATAAGGGTTGGATGTGTATACAGGTCTTTTTTGTTCGAAATGG
AAAATTGATTCAGCGTGACGTGAATATGTTTCCTTATTATAATGAACCAGAGGAAGATTTTCTAACTTACATAGGGCAAT
TTTATCAAGATACAAAACATTTTCTACCCAAAGAAGTCTTTATTCCACAGGATATTGATGCTAAGTCGGTTGAAACAATT
GTAGGCTGTAAGATTGTTAAACCACAACGTGGTGAAAAGAAACAGTTAGTAAATCTGGCAATAAAAAATGCTCGTGTCAG
TTTACAACAGAAGTTTGACTTACTGGAAAAAGATATTCGTAAAACTCATGGGGCAATTGAAAATTTAGGTAATCTTCTTA
ATATCCCTAAACCAGTACGCATAGAAGCATTTGATAATTCCAATATTCAAGGGACAAGTCCAGTAGCTGCTATGGTGGTA
TTTGTGAATGGAAAGCCAAGTAAAAAAGACTATCGAAAGTTTAAAATTAAGACTGTTATCGGACCAGATGATTATGCTAG
TATGAGAGAAGTCATTCATCGGCGTTATAGTAGGGTTTTAAAAGATGGCTTGACACCTCCGGACTTGATTGTAATTGATG
GTGGTCAGGGGCAAGTAAATATAGCGCGTGATGTTATTGAGAACCAATTTGGTTTAGCCATACCTATTGCAGGTTTGCAA
AAGAATGATAAACACCAAACACATGAATTACTTTTTGGAGATCCTTTAGAAGTAGTAGAGCTACCGCGTAATTCAGAAGA
ATTTTTCTTACTTCACCGTATTCAAGATGAGGTACATCGTTTTGCTATTACTTTTCATCGTCAATTACGCTCCAAAAATT
CCTTTTCTTCAAAATTAGATGGTATCACTGGGTTGGGACCAAAACGTAAACAATTGCTAATGAAACATTTTAAAAGCTTA
CCTAATATCCAAAAAGCTGAGATTGAGGACATTATTATGTGTGGTATTCCTAGGACTGTTGCAGAAAGTCTCCGAGATTC
TCTTAATGATCCTCCTAAATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(197-229)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

76.231

99.325

0.757
  uvrC Streptococcus pneumoniae R6

75.891

99.325

0.754
  uvrC Streptococcus pneumoniae D39

75.891

99.325

0.754