Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   VJ143_RS19435 Genome accession   NZ_CP142740
Coordinates   4152610..4153239 (+) Length   209 a.a.
NCBI ID   WP_327857806.1    Uniprot ID   -
Organism   Acinetobacter guillouiae strain 13-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4147610..4158239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VJ143_RS19415 (VJ143_19425) - 4148710..4149222 (-) 513 WP_004725653.1 alpha-ketoglutarate-dependent dioxygenase AlkB -
  VJ143_RS19420 (VJ143_19430) - 4149243..4150064 (-) 822 WP_327857805.1 NAD(P)H-binding protein -
  VJ143_RS19425 (VJ143_19435) recG 4150124..4152169 (+) 2046 WP_262781801.1 ATP-dependent DNA helicase RecG -
  VJ143_RS19430 (VJ143_19440) - 4152187..4152573 (+) 387 WP_151956985.1 hypothetical protein -
  VJ143_RS19435 (VJ143_19445) comF 4152610..4153239 (+) 630 WP_327857806.1 ComF family protein Machinery gene
  VJ143_RS19440 (VJ143_19450) - 4153292..4153690 (-) 399 WP_035371913.1 NUDIX hydrolase -
  VJ143_RS19445 (VJ143_19455) - 4153768..4154385 (-) 618 WP_056512161.1 TIGR00730 family Rossman fold protein -
  VJ143_RS19450 (VJ143_19460) - 4154544..4155557 (+) 1014 WP_004725641.1 magnesium and cobalt transport protein CorA -
  VJ143_RS19455 (VJ143_19465) - 4155672..4155959 (-) 288 WP_004725639.1 anti-sigma factor antagonist -
  VJ143_RS19460 (VJ143_19470) - 4155987..4156607 (-) 621 WP_004725637.1 phospholipid-binding protein MlaC -
  VJ143_RS19465 (VJ143_19475) - 4156629..4157306 (-) 678 WP_004725635.1 outer membrane lipid asymmetry maintenance protein MlaD -
  VJ143_RS19470 (VJ143_19480) mlaE 4157306..4158085 (-) 780 WP_004725633.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24417.63 Da        Isoelectric Point: 9.5349

>NTDB_id=926657 VJ143_RS19435 WP_327857806.1 4152610..4153239(+) (comF) [Acinetobacter guillouiae strain 13-3]
MLQFINQLLHKSIQSLSPCLLCGIDRQQQHSLCNACWNQLPWYKQHIERHQQQIVCAHRYDFPIDRIIQVYKYEQQLQYQ
TLLAQSLLNLSLPKIQAIVPMPISTARLKERGYNQMLIIAKIMARQLNIPVWQPVIREAQHSQKGLSRIERLENIEYQFK
MIKTEKRKYKKVLIIDDVVTTGSSIHALTHALENLGCQQIYSVCIAAAQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=926657 VJ143_RS19435 WP_327857806.1 4152610..4153239(+) (comF) [Acinetobacter guillouiae strain 13-3]
ATGCTCCAATTTATCAATCAACTTCTCCATAAAAGCATACAAAGCCTTTCCCCTTGCCTCCTTTGTGGAATAGACCGACA
ACAACAGCATTCCCTTTGTAATGCGTGCTGGAATCAATTGCCTTGGTATAAGCAGCATATAGAACGACATCAACAACAGA
TTGTTTGTGCTCACCGTTACGACTTCCCAATTGATCGCATCATCCAAGTCTACAAATATGAACAGCAACTGCAATATCAG
ACACTATTGGCACAAAGTTTATTGAATTTAAGCCTACCTAAAATTCAAGCCATTGTCCCTATGCCAATTTCTACTGCTCG
TTTAAAAGAACGCGGCTACAATCAAATGCTGATTATCGCCAAAATCATGGCAAGGCAATTAAATATCCCGGTATGGCAAC
CCGTGATTCGAGAGGCGCAACACTCACAAAAAGGTTTAAGTAGAATTGAGCGCTTAGAAAATATTGAATATCAATTTAAA
ATGATCAAAACAGAAAAAAGAAAATATAAAAAAGTACTGATTATTGACGATGTCGTGACCACAGGCAGTTCAATTCATGC
TTTAACCCATGCGTTAGAAAACTTAGGCTGCCAGCAGATTTATAGTGTATGTATTGCCGCAGCTCAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

59.809

100

0.598
  comF Acinetobacter baumannii D1279779

59.33

100

0.593