Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AB5Z16_RS02470 Genome accession   NZ_CP163544
Coordinates   540549..541274 (-) Length   241 a.a.
NCBI ID   WP_003117927.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PAHT-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 535549..546274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5Z16_RS02445 (AB5Z16_02445) - 536021..536536 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  AB5Z16_RS02450 (AB5Z16_02450) rarD 537226..538122 (-) 897 WP_003103301.1 EamA family transporter RarD -
  AB5Z16_RS02455 (AB5Z16_02455) - 538325..539299 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  AB5Z16_RS02460 (AB5Z16_02460) - 539361..540119 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  AB5Z16_RS02465 (AB5Z16_02465) - 540187..540507 (-) 321 WP_003117926.1 YfiM family lipoprotein -
  AB5Z16_RS02470 (AB5Z16_02470) comF 540549..541274 (-) 726 WP_003117927.1 ComF family protein Machinery gene
  AB5Z16_RS02475 (AB5Z16_02475) - 541413..541706 (-) 294 WP_003113255.1 hypothetical protein -
  AB5Z16_RS02480 (AB5Z16_02480) - 541760..542686 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  AB5Z16_RS02485 (AB5Z16_02485) - 542804..543562 (+) 759 WP_023085688.1 5-oxoprolinase subunit PxpA -
  AB5Z16_RS02490 (AB5Z16_02490) - 543639..543887 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  AB5Z16_RS02495 (AB5Z16_02495) - 543898..545274 (+) 1377 WP_016852389.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  AB5Z16_RS02500 (AB5Z16_02500) - 545276..546154 (+) 879 WP_114231338.1 allophanate hydrolase subunit 1 -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27062.56 Da        Isoelectric Point: 11.2212

>NTDB_id=926657 AB5Z16_RS02470 WP_003117927.1 540549..541274(-) (comF) [Pseudomonas aeruginosa strain PAHT-1]
MSFPLRPLTRWLLPPPACLLCAARSDQPARPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=926657 AB5Z16_RS02470 WP_003117927.1 540549..541274(-) (comF) [Pseudomonas aeruginosa strain PAHT-1]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGGCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGACTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.017

100

0.382