Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   AB5L52_RS19460 Genome accession   NZ_CP163525
Coordinates   4277254..4278663 (+) Length   469 a.a.
NCBI ID   WP_351031613.1    Uniprot ID   -
Organism   Streptomyces sp. CG4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4272254..4283663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5L52_RS19445 (AB5L52_19445) - 4273135..4274067 (-) 933 WP_351031605.1 Ppx/GppA phosphatase family protein -
  AB5L52_RS19450 (AB5L52_19450) - 4274139..4274996 (+) 858 WP_369365259.1 hypothetical protein -
  AB5L52_RS19455 (AB5L52_19455) - 4275153..4276874 (-) 1722 WP_351031610.1 hypothetical protein -
  AB5L52_RS19460 (AB5L52_19460) radA/sms 4277254..4278663 (+) 1410 WP_351031613.1 DNA repair protein RadA Machinery gene
  AB5L52_RS19465 (AB5L52_19465) disA 4278744..4279868 (+) 1125 WP_351031615.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  AB5L52_RS19470 (AB5L52_19470) - 4280003..4280449 (+) 447 WP_351031617.1 RICIN domain-containing protein -
  AB5L52_RS19475 (AB5L52_19475) - 4280505..4281302 (-) 798 WP_351766824.1 hypothetical protein -
  AB5L52_RS19480 (AB5L52_19480) - 4281482..4282357 (+) 876 WP_369365266.1 A/G-specific adenine glycosylase -
  AB5L52_RS19485 (AB5L52_19485) - 4282629..4283168 (+) 540 WP_030751823.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49825.02 Da        Isoelectric Point: 8.0027

>NTDB_id=926601 AB5L52_RS19460 WP_351031613.1 4277254..4278663(+) (radA/sms) [Streptomyces sp. CG4]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTIEEYGAPAVRTTAPGRVTRSALPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASAEHRTLYVTGEESASQVRLRADRIGALHDELYLAAETDLSAVL
GHLDEVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAQRLGFTHALVPTDPGKVPPGMKVLEVADMGDALRVLPRSRRREAPREAEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=926601 AB5L52_RS19460 WP_351031613.1 4277254..4278663(+) (radA/sms) [Streptomyces sp. CG4]
ATGGCTGCCCGTACCAAGACCACCAAGGACCGCCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGCACGATCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACGGCACCCGGCC
GCGTCACCCGCTCCGCGCTGCCCATCGGCCAGGTCGACGGCCGGCAGGCCACCGCCCGCTCGACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGCCTGGTGCCCGGCGCGGTCGTGCTGCTCGCCGGCGAGCCGGGCGTCGGCAAGTCGACGCT
GCTGCTGGACGTGGCCGCCAAGTCCGCGAGCGCGGAGCACCGCACGCTCTATGTCACCGGCGAAGAGTCGGCGAGCCAGG
TGCGGCTGCGCGCGGACCGCATCGGCGCCCTGCACGACGAGCTGTATCTGGCCGCCGAGACCGATCTGTCCGCCGTCCTC
GGCCACTTGGACGAGGTGAAGCCGTCGCTGCTGATCCTGGACTCGGTGCAGACGGTCGCGTCCCCGGAGATCGACGGCGC
GCCCGGCGGCATGGCCCAGGTGCGGGAGGTGGCGGGGGCCCTGATCCGCGCCTCCAAGGAGCGCGGCATGTCCACGCTGC
TGGTGGGCCATGTCACGAAGGACGGCGCCATCGCCGGCCCGCGCCTGCTGGAGCACCTCGTGGACGTCGTCCTCCACTTC
GAGGGCGACCGGCACGCGCGCCTCCGTCTCGTCCGCGGCGTGAAGAACCGCTACGGCGCCACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTCGCCGACCCGAGCGGACTCTTCCTGACCCGTCGGGACGAACCGGTCCCCG
GCACCTGTCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTGGTGGCCGAGGTGCAGGCGCTGACCGTCGACTCCCAGATC
CCCTCCCCGCGGCGTACGACCTCGGGCCTGGAGACCTCGCGCGTGTCGATGATGCTGGCCGTCCTGGAGCAGCGCGGCCG
GATCAGCGCGCTCGGCAAGCGGGACATCTACTCCGCGACGGTGGGCGGGGTGAAGCTGTCGGAGCCGGCCGCCGACCTCG
CGGTCGCGCTGGCGCTGGCCTCCGCCGCCAGTGACACCCCGCTGCCGAAGAATCTGGTGGCCATCGGCGAGGTGGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGCGTGCAGCGCAGGCTCGCCGAGGCGCAGCGGCTGGGCTTCACGCACGCGCTCGT
GCCGACCGACCCGGGCAAGGTGCCGCCCGGCATGAAGGTCCTGGAAGTGGCCGACATGGGGGACGCGCTGCGGGTGCTGC
CACGCTCGCGTCGCCGAGAGGCCCCACGGGAGGCGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.142

96.375

0.416
  radA Streptococcus mitis SK321

43.111

95.949

0.414
  radA Streptococcus mitis NCTC 12261

43.111

95.949

0.414
  radA Streptococcus pneumoniae Rx1

42.667

95.949

0.409
  radA Streptococcus pneumoniae D39

42.667

95.949

0.409
  radA Streptococcus pneumoniae R6

42.667

95.949

0.409
  radA Streptococcus pneumoniae TIGR4

42.667

95.949

0.409