Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   AB5J89_RS34520 Genome accession   NZ_CP163523
Coordinates   7730067..7732547 (+) Length   826 a.a.
NCBI ID   WP_369360131.1    Uniprot ID   -
Organism   Streptomyces sp. cg2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7725067..7737547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J89_RS34495 (AB5J89_34495) - 7725862..7726029 (+) 168 Protein_6806 VOC family protein -
  AB5J89_RS34500 (AB5J89_34500) - 7726153..7726773 (+) 621 WP_221910023.1 TetR/AcrR family transcriptional regulator -
  AB5J89_RS34505 (AB5J89_34505) - 7727043..7728272 (+) 1230 WP_221910024.1 cytochrome P450 -
  AB5J89_RS34510 (AB5J89_34510) - 7728411..7728605 (+) 195 WP_018542928.1 ferredoxin -
  AB5J89_RS34515 (AB5J89_34515) - 7728602..7729945 (+) 1344 WP_369360130.1 NAD(P)/FAD-dependent oxidoreductase -
  AB5J89_RS34520 (AB5J89_34520) uvrA 7730067..7732547 (+) 2481 WP_369360131.1 excinuclease ABC subunit UvrA Machinery gene
  AB5J89_RS34525 (AB5J89_34525) - 7732628..7732759 (+) 132 Protein_6812 EF-hand domain-containing protein -
  AB5J89_RS34530 (AB5J89_34530) - 7732735..7735227 (-) 2493 WP_369360132.1 GH92 family glycosyl hydrolase -
  AB5J89_RS34535 (AB5J89_34535) - 7735374..7736813 (-) 1440 WP_221910029.1 amino acid permease -
  AB5J89_RS34540 (AB5J89_34540) - 7736935..7737150 (-) 216 WP_221910030.1 dodecin -

Sequence

Protein


Download         Length: 826 a.a.        Molecular weight: 88318.80 Da        Isoelectric Point: 6.9670

>NTDB_id=926558 AB5J89_RS34520 WP_369360131.1 7730067..7732547(+) (uvrA) [Streptomyces sp. cg2]
MTDSYVRVRGAREHNLRGIDVDIPRDALVAFTGVSGSGKSSLAFGTLYAEAQRRYFESVAPYARRLIHQVGAPKVEEISG
LPPAVALEQRRSAPTSRSSVGTVTTLSNTLRMLFSRAGDYPPGSTERLDSDAFSPNTAAGACPECHGLGTVHRVTEDSLV
PDASLSVRDGAVAAWPGAWQGKNLRDILATLGHDIDRPWRELPPADREWILFTDEQPVVTVHPVREAGRIQRPYKGQYMS
ARRYVLHTFADSKSETLRKRVRQFMTAEPCPACGGRRLRPEALAVTFEGHDIATLAGLPLATLAELLRPTAARPGDEPAP
ALARDLVARIEVLTELGLGYLGMDRPAPTLSAGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTEALLTVLRRLKEA
GNTLFVVEHDMDVVRHADWLVDVGPRAGEHGGRVLHSGPVAALADAEHSATRRFLFATEPPPVRTPRTPTGTLALHGVTL
HNLRDLDAAFPLGVFTAVTGVSGSGKSTLVTRVLAEAVQEHLGAADPRPDAADTTADDGDADRATGPAPRARLTAATGLD
AVDRLVRVDQKPIGRTPRSNLATYTGLFDAVRKVFAATDEARARGYTAGRFSFNVPAGRCETCQGEGFTAVELLFLPGTY
APCADCHGARYNPETLQITHRDRTIADVLGLTVDDAAEFLADVPAAARSLRTLKDVGLGYLRLGQPATELSGGEAQRIKL
ATELQRARRGHTLYLLDEPTTGLHPADTEVLLRQLHGLVDAGNTVVVVEHDMGVVAGADHVIDLGPGGGAEGGRIVAAGT
PAEVAAAPGSRTAGYLARRRAHRERS

Nucleotide


Download         Length: 2481 bp        

>NTDB_id=926558 AB5J89_RS34520 WP_369360131.1 7730067..7732547(+) (uvrA) [Streptomyces sp. cg2]
ATGACCGACTCGTACGTCCGGGTGCGCGGCGCCCGTGAGCACAACCTCCGCGGTATCGATGTGGACATCCCGAGGGACGC
GCTGGTCGCGTTCACCGGGGTGTCCGGATCGGGGAAGTCCTCGCTCGCCTTCGGCACGCTCTACGCCGAGGCGCAGCGCC
GCTACTTCGAGTCGGTCGCCCCCTACGCCCGGCGGCTGATCCACCAGGTCGGCGCGCCCAAGGTCGAGGAGATCAGCGGG
CTGCCGCCGGCCGTCGCACTGGAGCAGCGGCGCTCCGCGCCCACCTCCCGCTCCTCGGTCGGCACCGTCACCACCCTCTC
CAACACCCTGCGGATGCTCTTCTCCCGCGCCGGCGACTACCCTCCCGGCAGCACCGAACGCCTCGACTCCGACGCCTTCT
CGCCCAACACCGCCGCCGGCGCCTGCCCCGAGTGCCACGGACTGGGCACCGTCCATCGCGTCACCGAGGACTCCCTCGTC
CCCGACGCCTCGCTCTCCGTCCGCGACGGCGCCGTCGCCGCCTGGCCCGGCGCCTGGCAGGGCAAAAACCTCCGCGACAT
CCTCGCCACCCTCGGCCACGACATCGACCGCCCCTGGCGCGAGCTGCCGCCCGCCGACCGCGAGTGGATCCTGTTCACCG
ACGAACAGCCCGTCGTCACCGTCCACCCGGTCCGCGAGGCCGGCCGCATCCAACGCCCCTACAAGGGCCAGTACATGAGC
GCCCGACGCTATGTCCTGCACACCTTCGCCGACTCCAAGAGCGAGACGCTGCGCAAGCGCGTCCGGCAGTTCATGACCGC
CGAGCCCTGCCCGGCGTGCGGCGGCCGCAGGCTGCGCCCCGAGGCGCTGGCGGTCACCTTCGAGGGCCACGACATCGCCA
CCCTCGCCGGCCTGCCGCTGGCCACCCTCGCCGAGCTCCTCCGTCCCACCGCCGCCCGCCCCGGTGACGAGCCGGCACCG
GCCCTCGCCCGGGACCTCGTCGCCCGTATCGAAGTCCTCACCGAACTCGGCCTGGGCTACCTCGGCATGGACCGCCCCGC
CCCCACCCTCTCCGCCGGCGAACTCCAGCGCCTCCGCCTCGCCACCCAGCTGCGCTCCGGCCTCTTCGGCGTGGTCTACG
TCCTCGACGAACCCTCCGCCGGCCTGCACCCCGCCGACACCGAAGCGCTGCTCACCGTCCTGCGCCGCCTCAAGGAGGCC
GGCAACACCCTCTTCGTCGTCGAACACGACATGGACGTGGTCCGGCACGCCGACTGGCTCGTGGACGTCGGCCCCCGCGC
CGGGGAGCACGGCGGCCGGGTCCTGCACAGCGGCCCGGTCGCCGCCCTCGCCGACGCCGAGCACTCCGCCACCCGCCGCT
TCCTCTTCGCCACCGAACCGCCCCCCGTCCGCACCCCGCGCACCCCCACCGGCACCCTGGCCCTGCACGGCGTCACCCTG
CACAACCTCCGCGACCTGGACGCGGCCTTCCCGCTCGGCGTCTTCACCGCCGTCACCGGCGTCTCCGGATCCGGCAAGTC
GACCCTGGTCACCCGGGTCCTCGCCGAGGCCGTCCAGGAACACCTGGGCGCCGCCGACCCCCGCCCGGACGCCGCCGACA
CCACCGCCGACGACGGTGACGCCGACCGGGCCACCGGGCCGGCGCCCCGCGCCCGGCTCACCGCCGCCACCGGCCTGGAC
GCCGTCGACCGGCTGGTCCGCGTCGACCAGAAGCCCATCGGCCGCACCCCGCGCTCCAACCTCGCCACGTACACCGGCCT
GTTCGACGCCGTCCGCAAGGTCTTCGCCGCCACCGACGAGGCCCGCGCCCGCGGCTACACCGCAGGACGGTTCTCCTTCA
ACGTCCCCGCCGGCCGCTGCGAGACCTGCCAGGGCGAGGGCTTCACCGCCGTCGAACTCCTCTTCCTGCCCGGCACCTAC
GCCCCCTGCGCCGACTGCCACGGCGCCCGCTACAACCCCGAGACCCTCCAGATCACCCACCGCGACCGCACCATCGCCGA
CGTGCTGGGCCTGACCGTCGACGACGCCGCGGAGTTCCTCGCCGACGTCCCCGCCGCCGCCCGCAGCCTGCGCACCCTGA
AGGACGTCGGGCTCGGCTATCTGCGGCTCGGCCAGCCCGCCACCGAACTCTCCGGCGGCGAGGCCCAGCGCATCAAACTC
GCCACCGAACTCCAGCGCGCCCGCCGCGGCCACACCCTCTACCTCCTCGACGAGCCCACCACCGGCCTGCACCCCGCCGA
CACCGAGGTGCTGCTGCGGCAGCTGCACGGCCTGGTCGACGCGGGCAACACCGTCGTGGTCGTCGAGCACGACATGGGCG
TGGTGGCGGGCGCCGACCACGTCATCGACCTGGGTCCCGGCGGTGGCGCGGAGGGCGGCCGGATCGTCGCCGCCGGCACC
CCCGCGGAGGTCGCCGCCGCCCCCGGCAGCCGCACCGCCGGCTATCTCGCCCGCCGGAGGGCGCACCGGGAACGTTCTTG
A

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(484-740)

UvrA DNA-binding domain (UvrA_DNA-bind)

(157-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

42.735

84.988

0.363
  uvrA Streptococcus pneumoniae TIGR4

42.735

84.988

0.363
  uvrA Streptococcus pneumoniae D39

42.735

84.988

0.363