Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R8628_RS00940 Genome accession   NZ_AP028335
Coordinates   183886..185391 (-) Length   501 a.a.
NCBI ID   WP_038816571.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10174     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 178886..190391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8628_RS00910 (B10174_01780) - 179088..180272 (-) 1185 WP_038813923.1 metallophosphoesterase -
  R8628_RS00915 (B10174_01790) - 180282..180491 (-) 210 WP_002859380.1 alkylphosphonate utilization protein -
  R8628_RS00920 (B10174_01800) - 180484..181203 (-) 720 WP_002851673.1 TerC family protein -
  R8628_RS00925 (B10174_01810) purN 181275..181841 (-) 567 WP_002867108.1 phosphoribosylglycinamide formyltransferase -
  R8628_RS00930 (B10174_01820) - 181832..183202 (-) 1371 WP_002851837.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  R8628_RS00935 (B10174_01830) - 183186..183884 (-) 699 WP_002826913.1 NYN domain-containing protein -
  R8628_RS00940 (B10174_01840) comM 183886..185391 (-) 1506 WP_038816571.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R8628_RS00945 (B10174_01850) def 185388..185915 (-) 528 WP_052795600.1 peptide deformylase -
  R8628_RS00950 (B10174_01860) clpP 185951..186535 (-) 585 WP_002806309.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  R8628_RS00955 (B10174_01870) tig 186535..187869 (-) 1335 WP_002851938.1 trigger factor -
  R8628_RS00960 (B10174_01880) folE 188013..188585 (+) 573 WP_002867111.1 GTP cyclohydrolase I FolE -
  R8628_RS00965 (B10174_01890) fliI 188585..189970 (+) 1386 WP_002867112.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56423.38 Da        Isoelectric Point: 8.4694

>NTDB_id=92653 R8628_RS00940 WP_038816571.1 183886..185391(-) (comM) [Campylobacter jejuni strain BCH-10174]
MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVERIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDL
AIALLILLQNEELDDFFVVGELGLDGSIKSTNELFSLLLFLSAKIEKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
FKEKNYENFRFSHNHPLFASPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALGMHNILFEGSPGSGKSMCAKRLV
YIMPPQSLSEILMQNAYMSLDSKDCEFTKIRAFRHPHHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIE
SLREPLEDHKIHISRVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLYVAMDEISK
DDKTSISSKEMSEKILQAFIFSKKRGQKEFNGKLKDEDLSRFCVLEKDAKDTLDLAISRYNLSLRSLNKILKVSRSIADL
EQSLNINKTHILEALSFRARN

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=92653 R8628_RS00940 WP_038816571.1 183886..185391(-) (comM) [Campylobacter jejuni strain BCH-10174]
ATGAAAAAACTAAAGTGCATAAGCTTTCATGAAGGCTTAGACATTATAGAGGTAGAATCCACTTTTACAAGAGGTTTGCC
AAATTTAAGCATAGTAGGGCTTGCAAGTACAGCGATTAAGGAAAGTGTCGAACGCATCAAAGCCACACTTTTAAGTTGTG
ATTTTGCTTTTCCTGCTAAAAAAATCACTATCAATCTTAGTCCTTCAGGCATCCCAAAAAAGGGATCACATTTTGATTTG
GCTATCGCTTTATTAATCCTTTTGCAAAATGAAGAATTAGATGACTTTTTTGTAGTAGGAGAATTAGGACTTGATGGAAG
TATTAAAAGCACAAATGAGCTTTTTTCTTTGCTTTTGTTTCTCTCTGCTAAAATTGAAAAAGCTAAAATCGTTGTTCCAA
AAAGTATAGCACAAAAAGCTTCCATGATACCAAATTTAGAGGTTTATGGACTTGAAAATTTAAATGAAGCAATAGAGTTT
TTTAAAGAAAAAAATTATGAAAATTTTCGTTTTTCTCACAATCATCCTTTATTCGCAAGTCCTTTACAAATAGAAAATGA
AATTTTTTTACAAAATATGGATTTTAAACTTGATTTTAAAGATATCAAAGGGCAGGAAAAAGCTAAAAGAGCTTGTATGA
TAGCTGCTTTAGGTATGCATAATATCTTATTTGAAGGAAGTCCAGGAAGTGGTAAAAGTATGTGTGCTAAACGCCTTGTT
TATATCATGCCTCCTCAAAGTTTAAGTGAAATTTTAATGCAAAATGCTTATATGTCTTTAGATTCAAAAGATTGTGAATT
TACTAAAATTCGTGCTTTTCGTCATCCTCATCATACTTCTACAAGAGCAAGTATTTTTGGCGGAGGAACAAAAAATGCTA
GAATTGGAGAAGTCGCACTTGCAAATGGTGGAGTATTATTTTTTGATGAATTTCCACATTTTAATAAGCAAATCATAGAG
AGTTTAAGAGAGCCTTTAGAGGATCATAAAATTCATATTTCAAGAGTAAATTCTAAAATCACTTATGAAACAAAATTTAG
CTTTATAGCTGCCCAAAATCCTTGTCCTTGTGGAAATTTATTTTCTAAAAATCTTTCTTGTGTTTGTAGTGAAAATGAGA
TTAAAAAATACAAAAATCACATTTCAGCTCCTATTATGGATAGGATTGATCTTTATGTAGCTATGGATGAGATCAGCAAG
GATGATAAAACGAGTATAAGTTCTAAAGAAATGAGTGAAAAAATTTTACAAGCTTTTATTTTTAGTAAAAAACGGGGGCA
AAAAGAATTTAATGGGAAATTAAAAGATGAAGATTTAAGTCGTTTTTGTGTATTGGAAAAAGATGCCAAAGATACGCTAG
ATTTAGCAATTTCACGTTATAATCTTTCTTTGCGATCGCTTAATAAAATTTTAAAAGTTTCAAGAAGTATAGCGGATTTA
GAACAAAGTCTTAATATTAACAAAACCCATATTTTAGAAGCTTTAAGCTTTAGAGCAAGGAATTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Subunit ChlI of Mg-chelatase (ChlI)

(18-134)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

47.495

99.601

0.473
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

36.6

99.8

0.365

Multiple sequence alignment