Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB5J89_RS22960 Genome accession   NZ_CP163523
Coordinates   5100013..5101425 (-) Length   470 a.a.
NCBI ID   WP_221906019.1    Uniprot ID   -
Organism   Streptomyces sp. cg2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5095013..5106425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J89_RS22940 (AB5J89_22940) - 5095682..5096140 (+) 459 WP_369358001.1 pyridoxamine 5'-phosphate oxidase family protein -
  AB5J89_RS22945 (AB5J89_22945) - 5096401..5097246 (+) 846 WP_369358002.1 hypothetical protein -
  AB5J89_RS22950 (AB5J89_22950) - 5097524..5098507 (+) 984 WP_369358004.1 NAD-dependent epimerase/dehydratase family protein -
  AB5J89_RS22955 (AB5J89_22955) disA 5098737..5099858 (-) 1122 WP_026247638.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  AB5J89_RS22960 (AB5J89_22960) radA 5100013..5101425 (-) 1413 WP_221906019.1 DNA repair protein RadA Machinery gene
  AB5J89_RS22965 (AB5J89_22965) - 5101656..5103524 (+) 1869 WP_369358006.1 sigma-70 family RNA polymerase sigma factor -
  AB5J89_RS22970 (AB5J89_22970) - 5103538..5104428 (-) 891 WP_369358008.1 hypothetical protein -
  AB5J89_RS22975 (AB5J89_22975) - 5104486..5105412 (+) 927 WP_221906022.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49632.79 Da        Isoelectric Point: 7.4056

>NTDB_id=926529 AB5J89_RS22960 WP_221906019.1 5100013..5101425(-) (radA) [Streptomyces sp. cg2]
MATRKSSAKERPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGTPAVRTTAPGRVTTAALPIGQVDGRQATARPTGVPE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASAEHRTLYVTGEESASQVRLRADRIGALDEDLYLAAETDLSAV
LGHLDSVKPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLH
FEGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAARLGFTHALVPTDPGKIPDGMRVLEVGDVGQALSVLPKRVRREAPREEEARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=926529 AB5J89_RS22960 WP_221906019.1 5100013..5101425(-) (radA) [Streptomyces sp. cg2]
ATGGCAACTCGCAAATCGTCGGCCAAGGAGCGCCCCTCGTACCGCTGCACCGAGTGCGGCTGGACCACCGCCAAGTGGCT
CGGCCGCTGCCCGGAGTGCCAGGCGTGGGGCACGGTCGAGGAGTTCGGCGGCACCCCCGCGGTGCGCACCACCGCGCCCG
GCCGGGTCACCACCGCCGCCCTGCCCATCGGCCAGGTCGACGGCCGGCAGGCCACCGCCCGCCCGACCGGCGTGCCCGAG
CTGGACCGCGTCCTGGGCGGCGGGCTGGTCCCCGGCGCGGTGGTGCTGCTGGCCGGCGAGCCCGGCGTCGGCAAGTCCAC
CCTCCTGTTGGACGTCGCCGCCAAGGCGGCCTCCGCCGAGCACCGCACGCTCTATGTGACGGGCGAGGAGTCCGCGAGCC
AGGTCCGGCTGCGCGCCGACCGCATCGGCGCCCTCGACGAGGATCTCTATCTGGCGGCCGAGACCGACCTCTCCGCCGTC
CTCGGCCATCTGGACAGCGTCAAGCCCTCGCTGCTGATCATGGACTCCGTGCAGACCGTCGCCTCCCCGGAGATCGACGG
CGCCCCGGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCCCTGATCCGGGCCTCCAAGGAGCGTGGCATGTCCACGC
TCCTGGTCGGCCACGTCACCAAGGACGGTGCGATCGCCGGCCCCCGCCTCCTGGAGCACCTGGTCGACGTCGTCCTGCAC
TTCGAGGGCGACCGGCACGCCCGGCTCCGCCTCGTCCGCGGCGTGAAGAACCGCTACGGCACCACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCTCCGGCCTCTTCCTGACCCGCCGCGACGAGCCGGTGC
CCGGCACCTGCCTGACGGTCACCCTTGAGGGCCGCCGCCCGCTGGTCGCCGAGGTCCAGGCGCTGACCGTCGACTCCCAG
ATCCCCTCCCCCCGGCGCACCACCTCCGGCCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTCCTGGAGCAGCGCGG
CCGGATCAGCGCCCTCGGCAAGCGCGACATCTACAGCGCCACGGTCGGCGGGGTGAAGCTCAGCGAGCCGGCCGCGGACC
TCGCGGTCGCCCTCGCCCTGGCCAGCGCCGCCAGCGACACCCCGCTGCCCAAGAACCTCGTCGCGATCGGCGAGGTCGGG
CTGGCCGGCGAGGTCCGGCGGGTCACCGGCGTGCAGCGCCGCCTGGCGGAGGCGGCCCGGCTCGGCTTCACGCACGCCCT
GGTTCCCACCGACCCCGGCAAGATCCCCGACGGAATGCGGGTCCTGGAGGTCGGCGACGTCGGCCAGGCACTGTCCGTGC
TGCCCAAGCGGGTCCGCCGGGAGGCCCCGCGGGAGGAGGAAGCGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(79-223)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae TIGR4

42.92

96.17

0.413
  radA Streptococcus pneumoniae D39

42.92

96.17

0.413
  radA Streptococcus pneumoniae R6

42.92

96.17

0.413
  radA Streptococcus pneumoniae Rx1

42.92

96.17

0.413
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.92

96.17

0.413
  radA Streptococcus mitis NCTC 12261

44.289

91.277

0.404
  radA Streptococcus mitis SK321

44.289

91.277

0.404