Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   VOI35_RS00045 Genome accession   NZ_CP142685
Coordinates   9910..11304 (-) Length   464 a.a.
NCBI ID   WP_407275864.1    Uniprot ID   -
Organism   Halothiobacillus sp. DCM-1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4910..16304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI35_RS00025 (VOI35_00025) nadC 6155..6991 (-) 837 WP_407275860.1 carboxylating nicotinate-nucleotide diphosphorylase -
  VOI35_RS00030 (VOI35_00030) phoB 7138..7833 (+) 696 WP_407275861.1 phosphate regulon transcriptional regulator PhoB -
  VOI35_RS00035 (VOI35_00035) phoR 7836..9218 (+) 1383 WP_407275862.1 phosphate regulon sensor histidine kinase PhoR -
  VOI35_RS00040 (VOI35_00040) - 9288..9698 (-) 411 WP_407275863.1 SCP-2 sterol transfer family protein -
  VOI35_RS00045 (VOI35_00045) pilR 9910..11304 (-) 1395 WP_407275864.1 sigma-54-dependent transcriptional regulator Regulator
  VOI35_RS00050 (VOI35_00050) - 11335..12957 (-) 1623 WP_407275865.1 sensor histidine kinase -
  VOI35_RS00055 (VOI35_00055) - 12954..13196 (-) 243 WP_407275866.1 PP0621 family protein -
  VOI35_RS00060 (VOI35_00060) msrA 13379..14719 (-) 1341 WP_407275867.1 peptide-methionine (S)-S-oxide reductase MsrA -
  VOI35_RS00065 (VOI35_00065) - 14721..15482 (-) 762 WP_407275868.1 DUF2063 domain-containing protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50953.32 Da        Isoelectric Point: 6.7798

>NTDB_id=926405 VOI35_RS00045 WP_407275864.1 9910..11304(-) (pilR) [Halothiobacillus sp. DCM-1]
MTACLIVDDELDIRTLIALALKREGVTCHLAADLAEARQHLQQHGATLGFCLTDMRLPDGDGLDLLDEIRAQWPNLPVAV
ITAHGQVDAAVRALKAGAFDFVSKPIEHAVLKRLLRDAQNLNQSPPSAIDRPAPSVISPPRSPQVVIPAVPRSSLIGESA
AMQTLRSTIEKLARSQAPVFICGESGTGKELVAREIHQHSARAHGPFIAVNCGAIPADLIESELFGHKKGAFTGAHQAHD
GLFRAAEGGVLFLDEVADLPLGLQVKLLRAIQERKVRPVGESTEVPIDVRIISASHQDLNLAVTAGKFRQDLYFRLNVIE
LRVPPLRARLDDLPLLCQHILTKLCAREHRPAPNLSPDALTWLQQQPFPGNVRELENRLERALALTDHDQISQHELDGDG
FSTNEPARAAIPPPSVPHDPIEADEQRQVLHALAQTRWNRSEAARQLGLTLRQLRYRLSKWGIE

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=926405 VOI35_RS00045 WP_407275864.1 9910..11304(-) (pilR) [Halothiobacillus sp. DCM-1]
ATGACCGCCTGCCTGATCGTTGACGACGAACTCGATATCCGGACCCTGATCGCCCTAGCGCTCAAACGCGAGGGGGTGAC
CTGTCACCTCGCCGCCGATCTGGCCGAAGCCCGTCAACACCTGCAGCAACACGGCGCGACCCTCGGTTTTTGCCTGACCG
ATATGCGCCTCCCCGATGGGGACGGGCTCGACCTGCTCGATGAAATCCGGGCGCAATGGCCGAATTTGCCCGTCGCCGTC
ATTACCGCCCATGGCCAGGTCGATGCCGCCGTGCGCGCCCTCAAGGCGGGCGCCTTCGATTTTGTCTCCAAACCCATCGA
ACACGCGGTACTCAAACGGCTGTTGCGCGATGCCCAGAATCTCAACCAGAGCCCCCCTTCCGCCATCGATCGCCCCGCGC
CTTCGGTGATCAGCCCGCCTCGTAGCCCACAGGTCGTCATACCCGCCGTGCCCAGATCTTCGCTGATCGGCGAATCCGCG
GCCATGCAAACACTTCGTAGCACCATCGAGAAACTCGCGCGCTCGCAGGCGCCGGTCTTTATCTGTGGTGAATCCGGTAC
CGGCAAAGAACTCGTGGCGCGGGAAATCCATCAACACAGCGCCCGCGCGCACGGCCCGTTCATCGCGGTGAATTGCGGCG
CGATTCCGGCCGACCTGATCGAGAGCGAGCTGTTCGGCCATAAGAAGGGCGCGTTCACCGGCGCCCATCAGGCGCATGAC
GGGCTGTTCCGCGCGGCGGAAGGGGGCGTCCTGTTTCTCGATGAAGTGGCCGATCTGCCCCTCGGGCTCCAGGTCAAACT
GCTCCGCGCGATTCAGGAACGCAAAGTCCGCCCCGTGGGGGAATCGACCGAAGTCCCGATCGATGTGCGCATCATTTCCG
CCTCACACCAGGATTTGAATCTCGCCGTCACCGCGGGCAAATTCCGGCAGGATCTCTATTTCCGGCTGAATGTGATCGAG
CTTCGGGTGCCGCCCCTGCGCGCGCGCCTGGATGACTTACCCCTGTTGTGCCAGCACATCCTGACGAAACTCTGCGCCCG
GGAGCACAGGCCAGCCCCCAACCTCAGCCCGGATGCGCTAACCTGGTTACAACAACAACCGTTTCCCGGCAATGTTCGAG
AACTGGAAAACCGGCTGGAACGCGCACTCGCGCTCACGGATCACGACCAGATCAGCCAACACGAGCTCGATGGCGACGGG
TTCAGCACCAACGAACCGGCGCGCGCCGCCATCCCGCCGCCCTCTGTTCCGCACGACCCCATCGAAGCGGATGAACAGCG
ACAGGTTCTGCATGCCCTGGCGCAAACGCGCTGGAACCGCAGCGAGGCCGCGCGCCAATTGGGTCTCACGCTGCGGCAAT
TACGCTACCGATTGAGTAAATGGGGGATCGAATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(155-321)

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(425-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

51.515

99.569

0.513
  pilR Acinetobacter baumannii strain A118

47.49

100

0.489