Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   VSY18_RS21240 Genome accession   NZ_CP142670
Coordinates   4107293..4109032 (-) Length   579 a.a.
NCBI ID   WP_048531051.1    Uniprot ID   A0AAW5XWL6
Organism   Bacillus albus strain YK87     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4102293..4114032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSY18_RS21220 (VSY18_21220) - 4102646..4102792 (+) 147 WP_001247671.1 YycC family protein -
  VSY18_RS21225 (VSY18_21225) - 4102981..4104507 (-) 1527 WP_071757303.1 glycosyltransferase family 39 protein -
  VSY18_RS21230 (VSY18_21230) spo0A 4104794..4105588 (-) 795 WP_033686380.1 sporulation transcription factor Spo0A Regulator
  VSY18_RS21235 (VSY18_21235) spoIVB 4105876..4107174 (-) 1299 WP_048531049.1 SpoIVB peptidase -
  VSY18_RS21240 (VSY18_21240) recN 4107293..4109032 (-) 1740 WP_048531051.1 DNA repair protein RecN Machinery gene
  VSY18_RS21245 (VSY18_21245) argR 4109300..4109749 (-) 450 WP_001032581.1 arginine repressor ArgR -
  VSY18_RS21250 (VSY18_21250) - 4109892..4110731 (-) 840 WP_048531053.1 TlyA family RNA methyltransferase -
  VSY18_RS21255 (VSY18_21255) dxs 4110735..4112627 (-) 1893 WP_048531055.1 1-deoxy-D-xylulose-5-phosphate synthase -
  VSY18_RS21260 (VSY18_21260) ispA 4112930..4113820 (-) 891 WP_166688061.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65835.94 Da        Isoelectric Point: 4.8260

>NTDB_id=926335 VSY18_RS21240 WP_048531051.1 4107293..4109032(-) (recN) [Bacillus albus strain YK87]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNVEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=926335 VSY18_RS21240 WP_048531051.1 4107293..4109032(-) (recN) [Bacillus albus strain YK87]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGATTAACGGTTTT
AAGTGGGGAAACAGGAGCTGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGTCGTGGTTCAGCGGAAT
TCGTTCGATACGGAACAGAAAAAGCTGAGATAGAGGGACTATTTTATGTAGAAGATGATAAGCATCCGTGCATTGAAAAG
GCAGAAGAATTGGACATAGAAATCGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAATGGAAAAAGCGTATG
TCGTGTAAATGGGAAATTAGTCACCCTTAGTATATTAAAAGAAATTGGAAAAACACTTGTTGATATTCATGGGCAGCACG
AAACGCAAGACTTAATGAATGAAGAGCGTCACTTATTTATGCTTGATCATTTTGATGGAGATCGTATTGTTAAACAATTG
GATATATATCAAAACGTATACGCTGATTATGAGAAGTTAAAAAAACAGTTAAAATCGTTAAGTGAAAATGAACAACAAAT
GGCGCATCGCTTAGATTTAATTCAATTCCAGCATGAAGAAATCCGTAAGGCGGATTTAAAGATGGATGAAGAAAATGAAT
TAACTGAAGAACGATTGCAAATTTCTAATTTCGAAAAAATTTATAAAGCATTAGGCGATGCATATCGATCGTTAAGCGCG
GACGGACAAGGATTAGATAATGTAAGAAGCGCAATGGGACAAATGGAAAGTATTACACATTTAGATGAAGTGTATCAAGA
AAATCATGATTCAATTGCAAATAGCTATTACTTATTAGAAGAAGTTGCGTATCAACTAAGAGAAAAGCTCGATATGATGG
AATATGATCCGAATCGTTTAGATGAAATCGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAGCAGTTAAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAACTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACAAAATTTGAAGTGAGAATTATG
AAGAGAGAAGGAAATGTGGAAGAGCCTCTTGTGGAGGGAGCACCGGTAAGACTTACAGCGGATGGCTACGATCATGTGGA
ATTTTATATTTCAACCAATCCAGGCGAACCGTTAAAACCACTTTCAAAGGTCGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCAGTTATTTTTGATGAGGTGGATACTGGTGTAAGT
GGCCGCGTCGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCACAAGTGCTTTGTATTACGCACTTACC
TCAAGTCGCTTCAATGGCGGATTCACATTTATTTATTCGAAAACAAGTAGCGAATGATCGAACAATTACGTCAGTTACTG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601