Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   VSY18_RS21230 Genome accession   NZ_CP142670
Coordinates   4104794..4105588 (-) Length   264 a.a.
NCBI ID   WP_033686380.1    Uniprot ID   A0A4Y6EYG5
Organism   Bacillus albus strain YK87     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4099794..4110588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSY18_RS21210 (VSY18_21210) - 4101584..4101817 (+) 234 WP_001190188.1 DUF2627 domain-containing protein -
  VSY18_RS21215 (VSY18_21215) - 4101867..4102595 (-) 729 WP_048531043.1 glycerophosphodiester phosphodiesterase -
  VSY18_RS21220 (VSY18_21220) - 4102646..4102792 (+) 147 WP_001247671.1 YycC family protein -
  VSY18_RS21225 (VSY18_21225) - 4102981..4104507 (-) 1527 WP_071757303.1 glycosyltransferase family 39 protein -
  VSY18_RS21230 (VSY18_21230) spo0A 4104794..4105588 (-) 795 WP_033686380.1 sporulation transcription factor Spo0A Regulator
  VSY18_RS21235 (VSY18_21235) spoIVB 4105876..4107174 (-) 1299 WP_048531049.1 SpoIVB peptidase -
  VSY18_RS21240 (VSY18_21240) recN 4107293..4109032 (-) 1740 WP_048531051.1 DNA repair protein RecN Machinery gene
  VSY18_RS21245 (VSY18_21245) argR 4109300..4109749 (-) 450 WP_001032581.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29454.20 Da        Isoelectric Point: 7.4718

>NTDB_id=926334 VSY18_RS21230 WP_033686380.1 4104794..4105588(-) (spo0A) [Bacillus albus strain YK87]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLKDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANATIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=926334 VSY18_RS21230 WP_033686380.1 4104794..4105588(-) (spo0A) [Bacillus albus strain YK87]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTAGTATCAATGCTAGAGAGTTATGTTGCTGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAATTTATTAAAAGACAAGCAGCCGGATGTACTTG
TTTTAGACATTATTATGCCACATTTAGATGGTTTAGCTGTATTAGAGAAAATGCGACATATTGAAAGGCTAAGACAGCCT
AGCGTAATTATGTTGACAGCATTTGGACAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCTTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTAAGCGGTAAAGCGAACGCTACTATTAAACGTCCAC
TTCCATCTTTCCGTTCAGCAACGACAATAGATGGAAAGCCGAAAAACTTAGATGCAAGCATTACGAGTATCATTCATGAA
ATTGGTGTGCCTGCTCATATTAAAGGGTATATGTACTTAAGGGAAGCGATCTCTATGGTGTACAACGATATCGAATTACT
TGGATCTATTACGAAAGTATTGTATCCAGATATTGCAAAGAAATATAATACAACAGCAAGCCGTGTTGAGCGAGCAATCC
GTCATGCGATTGAAGTAGCATGGAGTCGTGGGAATATTGATTCTATTTCGTCTTTATTCGGTTATACAGTATCTATGTCA
AAAGCAAAACCTACGAACTCCGAGTTCATTGCAATGGTTGCGGATAAGTTGAGACTTGAACATAAGGCTAGTTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y6EYG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818