Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   OX462_RS23675 Genome accession   NZ_CP142524
Coordinates   5283223..5284092 (+) Length   289 a.a.
NCBI ID   WP_070219386.1    Uniprot ID   A0A853SXU5
Organism   Janthinobacterium sp. SUN098     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5278223..5289092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OX462_RS23650 (OX462_23650) - 5278903..5279637 (+) 735 WP_268994178.1 TetR/AcrR family transcriptional regulator -
  OX462_RS23655 (OX462_23655) - 5279634..5280977 (+) 1344 WP_409027214.1 ABC1 kinase family protein -
  OX462_RS23660 (OX462_23660) - 5281126..5281515 (+) 390 WP_070219367.1 hypothetical protein -
  OX462_RS23665 (OX462_23665) - 5281649..5282299 (+) 651 WP_409027215.1 DJ-1/PfpI family protein -
  OX462_RS23670 (OX462_23670) - 5282347..5282937 (+) 591 WP_070219365.1 DUF2867 domain-containing protein -
  OX462_RS23675 (OX462_23675) pilD 5283223..5284092 (+) 870 WP_070219386.1 A24 family peptidase Machinery gene
  OX462_RS23680 (OX462_23680) coaE 5284115..5284762 (+) 648 WP_409027216.1 dephospho-CoA kinase -
  OX462_RS23685 (OX462_23685) zapD 5284825..5285580 (+) 756 WP_070219363.1 cell division protein ZapD -
  OX462_RS23690 (OX462_23690) yacG 5285599..5285790 (+) 192 WP_034785391.1 DNA gyrase inhibitor YacG -
  OX462_RS23695 (OX462_23695) - 5285794..5286216 (-) 423 WP_139143048.1 type II toxin-antitoxin system VapC family toxin -
  OX462_RS23700 (OX462_23700) - 5286223..5286432 (-) 210 WP_070219361.1 FitA-like ribbon-helix-helix domain-containing protein -
  OX462_RS23705 (OX462_23705) - 5286554..5286976 (-) 423 WP_070312907.1 NUDIX domain-containing protein -
  OX462_RS23710 (OX462_23710) - 5286973..5287854 (-) 882 WP_409027217.1 ATP-binding protein -
  OX462_RS23715 (OX462_23715) argJ 5287851..5289089 (-) 1239 WP_070290173.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 30909.76 Da        Isoelectric Point: 7.7407

>NTDB_id=926047 OX462_RS23675 WP_070219386.1 5283223..5284092(+) (pilD) [Janthinobacterium sp. SUN098]
MLQDTLLFAAPGNLPVALVAALFGLIVGSFLNVVIHRVPKMMERDSANYVAEESGLPLPHTDRYNLMLPHSNCTACGHRI
TAMENIPVISYLLLRGKCSACKAPISVRYPLVELLTGALSALLIWHFGSGWTGLATLVFAWLLIAMTFIDADTQMLPDDL
TFPLLWAGLLVNINGTFVPLQDAVIGAAAGYLALWAVYWAFKLATGKEGMGYGDFKLLAALGAWLGWTMLPTIILLSSVV
GAVVGIGLIVFAKRGRDKPIPFGPYLAAAGLIALLYGTPLSRLTLGLTG

Nucleotide


Download         Length: 870 bp        

>NTDB_id=926047 OX462_RS23675 WP_070219386.1 5283223..5284092(+) (pilD) [Janthinobacterium sp. SUN098]
ATGCTGCAAGATACCCTGCTGTTCGCCGCGCCCGGCAATTTGCCCGTCGCCCTCGTCGCCGCCCTGTTCGGCCTGATCGT
CGGCAGCTTCCTCAACGTGGTGATCCACCGCGTGCCGAAAATGATGGAGCGCGACTCCGCCAATTACGTGGCGGAAGAAA
GCGGCTTGCCCTTGCCGCACACGGACCGCTACAACCTGATGCTGCCGCACTCGAACTGCACCGCTTGCGGCCACCGCATC
ACGGCCATGGAAAACATCCCCGTCATCAGTTACCTGCTGCTGCGTGGCAAATGCAGCGCCTGCAAGGCCCCCATCTCCGT
GCGCTATCCGCTGGTGGAACTGCTGACGGGCGCGCTGTCGGCCCTGCTGATCTGGCATTTCGGCAGCGGCTGGACGGGCC
TGGCAACGCTCGTGTTTGCCTGGCTGCTGATCGCCATGACCTTCATCGACGCCGACACGCAAATGCTGCCCGACGACCTG
ACCTTCCCCCTGCTGTGGGCCGGCTTGCTGGTCAATATCAACGGCACTTTCGTGCCGCTGCAGGACGCCGTCATCGGCGC
GGCCGCCGGCTACCTGGCCCTGTGGGCCGTGTACTGGGCCTTCAAGCTGGCGACAGGCAAGGAGGGAATGGGCTATGGTG
ACTTCAAATTGCTGGCGGCGCTCGGTGCGTGGCTGGGCTGGACCATGTTGCCGACGATCATATTGTTGTCGTCGGTGGTC
GGCGCCGTGGTCGGCATCGGCCTGATCGTGTTTGCCAAGCGGGGACGCGACAAACCGATTCCCTTCGGCCCCTACCTGGC
GGCGGCAGGCCTGATCGCGCTGCTGTACGGCACGCCCCTGTCGCGGCTCACGCTGGGCCTGACCGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(137-246)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853SXU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

56.522

95.502

0.54
  pilD Vibrio campbellii strain DS40M4

56.489

90.657

0.512
  pilD Acinetobacter baumannii D1279779

47.387

99.308

0.471
  pilD Neisseria gonorrhoeae MS11

53.125

88.581

0.471
  pilD Acinetobacter nosocomialis M2

47.038

99.308

0.467