NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	OPV09_RS06095	Genome accession	NZ_CP142523
Coordinates	1332059..1332928 (-)	Length	289 a.a.
NCBI ID	WP_338682236.1	Uniprot ID	-
Organism	Janthinobacterium sp. TB1-E2
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1327059..1337928

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OPV09_RS06060 (OPV09_06060)	-	1328278..1329159 (+)	882	WP_338680877.1	ATP-binding protein	-
OPV09_RS06065 (OPV09_06065)	-	1329156..1329578 (+)	423	WP_070305645.1	NUDIX domain-containing protein	-
OPV09_RS06070 (OPV09_06070)	-	1329698..1329907 (+)	210	WP_319993352.1	DNA-binding protein	-
OPV09_RS06075 (OPV09_06075)	-	1329914..1330336 (+)	423	WP_338680878.1	VapC toxin family PIN domain ribonuclease	-
OPV09_RS06080 (OPV09_06080)	yacG	1330350..1330541 (-)	192	WP_034748814.1	DNA gyrase inhibitor YacG	-
OPV09_RS06085 (OPV09_06085)	zapD	1330560..1331315 (-)	756	WP_034748811.1	cell division protein ZapD	-
OPV09_RS06090 (OPV09_06090)	coaE	1331378..1332025 (-)	648	WP_319993350.1	dephospho-CoA kinase	-
OPV09_RS06095 (OPV09_06095)	pilD	1332059..1332928 (-)	870	WP_338682236.1	A24 family peptidase	Machinery gene
OPV09_RS06100 (OPV09_06100)	-	1333034..1334230 (-)	1197	WP_338680879.1	type II secretion system F family protein	-
OPV09_RS06105 (OPV09_06105)	-	1334304..1335776 (-)	1473	WP_257620598.1	DHA2 family efflux MFS transporter permease subunit	-
OPV09_RS06110 (OPV09_06110)	-	1335982..1337136 (+)	1155	WP_338680880.1	hypothetical protein	-

Sequence

Protein

Download Length: 289 a.a. Molecular weight: 30927.78 Da Isoelectric Point: 7.7389

                                >NTDB_id=926026 OPV09_RS06095 WP_338682236.1 1332059..1332928(-) (pilD) [Janthinobacterium sp. TB1-E2]

MLQDTLLFAAPGNLPVALVAALFGLIVGSFLNVVIHRVPKMMQRDSDNYVAEESGLPLPHTDRYNLMLPHSNCTACGHRI

TAMENIPVLSYLLLRGKCSACKAPISVRYPLVELLTGALSALLIWHFGSGWTGLATLVFAYLLIAMTFIDADTQMLPDDL

TFPLLWAGLLVNINGTFVPLQEAVIGAAAGYLALWAVYWAFKLATGKEGMGYGDFKLLAALGAWLGWTMLPTIILLSSLV

GAVVGIGLIVFAKRGRDKPIPFGPYLAAAGLIALLYGAPLSRLTLGLTG

Nucleotide

Download Length: 870 bp

                                >NTDB_id=926026 OPV09_RS06095 WP_338682236.1 1332059..1332928(-) (pilD) [Janthinobacterium sp. TB1-E2]

ATGCTGCAAGATACCCTGCTGTTCGCCGCGCCCGGCAACCTGCCCGTCGCCCTCGTCGCCGCCCTGTTCGGCCTGATCGT

CGGCAGCTTCCTCAACGTGGTGATCCACCGCGTGCCGAAAATGATGCAGCGCGACTCCGATAATTACGTGGCGGAAGAAA

GCGGCTTGCCCTTGCCGCACACGGACCGCTACAACCTGATGCTGCCGCATTCGAACTGCACCGCTTGCGGCCACCGCATC

ACGGCCATGGAAAACATCCCCGTCCTCAGTTACCTGCTGCTGCGCGGCAAGTGCAGCGCCTGCAAGGCGCCGATTTCCGT

GCGCTACCCGCTCGTCGAGCTGCTGACGGGCGCGCTGTCGGCCCTGTTGATCTGGCACTTCGGCAGCGGCTGGACGGGCC

TGGCCACGCTTGTGTTCGCGTATTTGCTGATCGCCATGACCTTCATCGATGCCGATACGCAAATGCTGCCGGACGACCTC

ACCTTCCCCCTGCTGTGGGCAGGACTGCTGGTCAATATCAACGGTACTTTCGTGCCCCTGCAAGAGGCCGTCATCGGCGC

GGCCGCCGGCTACCTGGCCCTGTGGGCCGTGTACTGGGCCTTCAAGCTGGCGACAGGCAAGGAGGGAATGGGCTATGGTG

ACTTCAAATTGCTGGCTGCGCTCGGTGCGTGGCTGGGCTGGACCATGCTGCCGACGATCATCCTGCTGTCGTCGCTGGTG

GGTGCCGTGGTCGGCATCGGCCTGATCGTGTTTGCCAAGCGCGGGCGCGACAAGCCGATTCCGTTCGGCCCCTACCTGGC

GGCGGCGGGCCTGATCGCGCTGCTGTACGGCGCACCCCTGTCGCGGCTCACGCTAGGCCTGACCGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-127)

Type IV leader peptidase family (Peptidase_A24)

(137-246)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	56.159	95.502	0.536
pilD	Vibrio campbellii strain DS40M4	54.962	90.657	0.498
pilD	Neisseria gonorrhoeae MS11	53.125	88.581	0.471
pilD	Acinetobacter baumannii D1279779	46.69	99.308	0.464
pilD	Acinetobacter nosocomialis M2	45.645	99.308	0.453

Detailed information NTG0926026