Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   R8663_RS06020 Genome accession   NZ_AP028331
Coordinates   1160447..1161112 (-) Length   221 a.a.
NCBI ID   WP_002884392.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10091     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1155447..1166112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8663_RS06005 (B10091_11830) groES 1157300..1157560 (+) 261 WP_070276675.1 co-chaperone GroES -
  R8663_RS06010 (B10091_11840) groL 1157581..1159218 (+) 1638 WP_002859291.1 chaperonin GroEL -
  R8663_RS06015 (B10091_11850) dccS 1159261..1160454 (-) 1194 WP_032581139.1 two-component system sensor histidine kinase DccS -
  R8663_RS06020 (B10091_11860) ciaR 1160447..1161112 (-) 666 WP_002884392.1 two-component system response regulator DccR Regulator
  R8663_RS06025 (B10091_11880) - 1161260..1161858 (+) 599 Protein_1167 bacteriohemerythrin -
  R8663_RS06030 (B10091_11890) - 1161869..1162117 (+) 249 WP_002853192.1 ribbon-helix-helix domain-containing protein -
  R8663_RS06040 (B10091_11900) - 1162375..1163622 (-) 1248 WP_002853241.1 ArsS family sensor histidine kinase -
  R8663_RS06045 (B10091_11910) - 1163619..1164293 (-) 675 WP_002853196.1 response regulator transcription factor -
  R8663_RS06050 (B10091_11920) htrA 1164369..1165787 (-) 1419 WP_002860448.1 serine protease HtrA -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25569.28 Da        Isoelectric Point: 4.6834

>NTDB_id=92586 R8663_RS06020 WP_002884392.1 1160447..1161112(-) (ciaR) [Campylobacter jejuni strain BCH-10091]
MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYERYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFM
TSLNTTNDLKQGFDAGCDDYIKKPFELAELSIRVKALLKRAFSHKNEDFEDLGDGLRFEFTTQILYHNNKALALPSKEIK
LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGYCYG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=92586 R8663_RS06020 WP_002884392.1 1160447..1161112(-) (ciaR) [Campylobacter jejuni strain BCH-10091]
ATGGCTGCTAAAATTTTACTTTTAGAAGATGATTTGAGCTTGAGTGAGATCATTGAAGAGTTTTTAAACGATGAGGGATA
TGAAGTATTTTTATGCGATAATGCACAAGAAGCTTTAGATATGGCTTATGAAAGATATTTTGATCTTTGGATTTTAGATG
TAAAAGTTCCTTTAGGAGATGGATTTTCATTACTTAAAGAATTAAGAAAAAGCGGAAAGCAAACTCCAGCAATTTTCATG
ACTTCTTTAAACACAACAAACGATTTAAAACAAGGCTTTGACGCAGGTTGTGATGATTATATAAAAAAACCTTTTGAACT
TGCCGAGTTATCTATCAGGGTTAAAGCTTTGCTTAAAAGAGCTTTTTCACATAAAAATGAAGATTTTGAAGATTTAGGGG
ATGGACTTAGGTTCGAATTTACTACACAAATTCTTTATCATAATAATAAAGCTTTGGCTTTGCCGAGTAAAGAGATTAAA
CTTTTGTCTTTATTGCTTAAAAATAAAAACAACTTTTTAAGCACAGAGAGAATTTTTGAAGAACTTTGGGATTATGATGA
GGAGCCTAGTGAGCTAAGTTTAAGAGCTTATGTAAAAAATTTACGTAAAATTTTAGGAAAAGAAAAAATTATAAACCAAA
GAGGCAGGGGATATTGCTATGGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae D39

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae R6

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae TIGR4

36.364

99.548

0.362

Multiple sequence alignment