Detailed information NTG0925697

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: U5897_RS07825
• Genome accession: NZ_CP142393
• Coordinates: 1613654..1614514 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152283.1
• Uniprot ID: A0A009QK25
• Organism: Acinetobacter baumannii strain 38
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1608654..1619514

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U5897_RS07800 (U5897_07800)	-	1609545..1610855 (+)	1311	WP_000753283.1	tetratricopeptide repeat protein	-
U5897_RS07805 (U5897_07805)	-	1610932..1611258 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
U5897_RS07810 (U5897_07810)	rlmB	1611360..1612109 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
U5897_RS07815 (U5897_07815)	-	1612145..1613059 (+)	915	WP_000075020.1	DMT family transporter	-
U5897_RS07820 (U5897_07820)	coaE	1613056..1613652 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
U5897_RS07825 (U5897_07825)	pilD	1613654..1614514 (-)	861	WP_001152283.1	prepilin peptidase	Machinery gene
U5897_RS07830 (U5897_07830)	pilC	1614514..1615740 (-)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
U5897_RS07835 (U5897_07835)	pilB	1615770..1617482 (-)	1713	WP_001274992.1	type IV-A pilus assembly ATPase PilB	Machinery gene
U5897_RS07840 (U5897_07840)	tpiA	1617773..1618567 (+)	795	WP_000016932.1	triose-phosphate isomerase	-
U5897_RS07845 (U5897_07845)	secG	1618580..1618909 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32144.59 Da
• Isoelectric Point: 7.1041

>NTDB_id=925697 U5897_RS07825 WP_001152283.1 1613654..1614514(-) (pilD) [Acinetobacter baumannii strain 38]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPVIELLTMLCSLVVVMMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=925697 U5897_RS07825 WP_001152283.1 1613654..1614514(-) (pilD) [Acinetobacter baumannii strain 38]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGTCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGATGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A009QK25

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Acinetobacter baumannii D1279779	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441