Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AB2U05_RS13800 Genome accession   NZ_CP163445
Coordinates   3296478..3297116 (-) Length   212 a.a.
NCBI ID   WP_369183359.1    Uniprot ID   -
Organism   Streptomyces sp. Y1     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3291478..3302116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2U05_RS13770 (AB2U05_13770) - 3292493..3293017 (+) 525 WP_369183356.1 GNAT family N-acetyltransferase -
  AB2U05_RS13775 (AB2U05_13775) - 3293040..3293552 (-) 513 WP_369183357.1 winged helix-turn-helix transcriptional regulator -
  AB2U05_RS13780 (AB2U05_13780) - 3293664..3294161 (+) 498 WP_369183358.1 hypothetical protein -
  AB2U05_RS13785 (AB2U05_13785) - 3294209..3295327 (-) 1119 WP_045696310.1 esterase family protein -
  AB2U05_RS13790 (AB2U05_13790) - 3295463..3295861 (+) 399 WP_045709413.1 helix-turn-helix domain-containing protein -
  AB2U05_RS13795 (AB2U05_13795) clpP 3295874..3296476 (-) 603 WP_045696306.1 ClpP family protease Regulator
  AB2U05_RS13800 (AB2U05_13800) clpP 3296478..3297116 (-) 639 WP_369183359.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB2U05_RS13805 (AB2U05_13805) - 3297238..3299676 (-) 2439 WP_369183360.1 FtsX-like permease family protein -
  AB2U05_RS13810 (AB2U05_13810) - 3299670..3300428 (-) 759 WP_063773502.1 ABC transporter ATP-binding protein -
  AB2U05_RS13815 (AB2U05_13815) - 3300619..3301008 (-) 390 WP_045696301.1 nuclear transport factor 2 family protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 22788.81 Da        Isoelectric Point: 5.3200

>NTDB_id=925696 AB2U05_RS13800 WP_369183359.1 3296478..3297116(-) (clpP) [Streptomyces sp. Y1]
MTPLTPLRPRAAEGDTAPSPFDDHLAAQLLAQRIVLLGTQVDDVSANRVCAQLLLLSAEDSRGDISLYINSPGGSVSAGL
AVYDTMKLIPNDVSTLAMGFAASMGQFLLTAGAPGKRFALPNARIMMHQPSAGIGGTAADIEIQAENLQFTKRTIERITA
EHTGRSEETIARDGDRDRWFTAEQAREYGIVDRVVESVADIRPASSRRRIGL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=925696 AB2U05_RS13800 WP_369183359.1 3296478..3297116(-) (clpP) [Streptomyces sp. Y1]
ATGACTCCGCTCACCCCGCTGCGGCCCCGCGCCGCCGAGGGCGACACCGCGCCCTCCCCCTTCGACGACCACCTCGCCGC
CCAGCTGCTGGCCCAGCGGATCGTCCTGCTCGGCACCCAGGTCGACGACGTGTCGGCCAACCGCGTCTGCGCGCAGTTGC
TGCTGCTCTCGGCGGAGGACTCGCGCGGCGACATCAGCCTGTACATCAACAGCCCCGGCGGCTCGGTCAGCGCGGGCCTG
GCCGTCTACGACACCATGAAGCTCATTCCCAACGACGTCTCCACCCTGGCGATGGGATTCGCCGCCAGCATGGGCCAGTT
CCTGCTCACCGCGGGAGCGCCCGGCAAGCGGTTCGCGCTGCCGAACGCGCGGATCATGATGCACCAGCCCTCGGCGGGCA
TCGGCGGCACGGCGGCCGACATCGAGATCCAGGCGGAGAACCTGCAGTTCACCAAGCGGACGATCGAGCGGATCACCGCC
GAGCACACCGGCCGGAGCGAGGAGACGATCGCCCGCGACGGCGACCGGGACCGCTGGTTCACGGCCGAGCAGGCCCGGGA
GTACGGGATCGTGGACCGGGTGGTGGAGTCGGTCGCCGACATCCGCCCGGCCTCCTCGCGTCGACGGATCGGACTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(25-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

49.432

83.019

0.41
  clpP Streptococcus pneumoniae Rx1

49.711

81.604

0.406
  clpP Streptococcus pneumoniae D39

49.711

81.604

0.406
  clpP Streptococcus pneumoniae R6

49.711

81.604

0.406
  clpP Streptococcus pneumoniae TIGR4

49.711

81.604

0.406
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.133

81.604

0.401
  clpP Lactococcus lactis subsp. cremoris KW2

47.429

82.547

0.392
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

46.857

82.547

0.387
  clpP Streptococcus pyogenes JRS4

46.857

82.547

0.387
  clpP Streptococcus pyogenes MGAS315

46.857

82.547

0.387
  clpP Streptococcus mutans UA159

46.286

82.547

0.382
  clpP Streptococcus thermophilus LMG 18311

45.665

81.604

0.373
  clpP Streptococcus thermophilus LMD-9

45.665

81.604

0.373