Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   U6115_RS11020 Genome accession   NZ_CP142381
Coordinates   2287547..2288338 (+) Length   263 a.a.
NCBI ID   WP_043573431.1    Uniprot ID   A0A2R2IS89
Organism   Chromobacterium subtsugae strain ATCC 31532     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2282547..2293338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6115_RS10990 (U6115_10990) - 2282603..2283325 (-) 723 WP_047244008.1 metallophosphoesterase -
  U6115_RS10995 (U6115_10995) - 2283344..2283997 (-) 654 WP_043573420.1 HD domain-containing protein -
  U6115_RS11000 (U6115_11000) - 2284110..2284982 (-) 873 WP_080770178.1 GNAT family N-acetyltransferase -
  U6115_RS11005 (U6115_11005) - 2284979..2285620 (-) 642 WP_230623337.1 AraC family transcriptional regulator -
  U6115_RS11010 (U6115_11010) pgeF 2285724..2286461 (-) 738 WP_043573426.1 peptidoglycan editing factor PgeF -
  U6115_RS11015 (U6115_11015) rluD 2286451..2287548 (-) 1098 WP_043573429.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  U6115_RS11020 (U6115_11020) comL 2287547..2288338 (+) 792 WP_043573431.1 outer membrane protein assembly factor BamD Machinery gene
  U6115_RS11025 (U6115_11025) - 2288414..2288752 (-) 339 WP_043573434.1 P-II family nitrogen regulator -
  U6115_RS11030 (U6115_11030) purL 2288899..2292858 (+) 3960 WP_043573437.1 phosphoribosylformylglycinamidine synthase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30167.30 Da        Isoelectric Point: 7.9732

>NTDB_id=925625 U6115_RS11020 WP_043573431.1 2287547..2288338(+) (comL) [Chromobacterium subtsugae strain ATCC 31532]
MKRYVVAAMLVMGLAGCATTETYDETRGWTVEKLYSEAHDELNSGNYTRAVKLYETLESRFPYGRYAQQAQMDLAYTHYK
DGEPEQAIAAADRFIKLHPTHPNLDYIYYLKGLVYFNDDSGLLAKWAGQDMSERDPRAAREAFAAFRELTTRFPNSTYTA
DASAKMIKLVDALGGNEMHVARYYMKRGAYLAAANRAQGVVKDYANTKYPEEALAIMVAAYDKLQLPQLRDDARRVLALN
YPKSQYLAKPWTVEEMPWWKLWK

Nucleotide


Download         Length: 792 bp        

>NTDB_id=925625 U6115_RS11020 WP_043573431.1 2287547..2288338(+) (comL) [Chromobacterium subtsugae strain ATCC 31532]
ATGAAAAGATACGTTGTTGCAGCAATGTTGGTGATGGGGCTTGCCGGATGTGCAACCACGGAAACCTACGACGAAACGCG
CGGCTGGACCGTGGAGAAGCTGTATTCGGAAGCTCACGACGAGTTGAACAGCGGCAATTATACCCGCGCTGTCAAGCTCT
ACGAAACGCTTGAGTCGCGCTTCCCTTACGGACGCTATGCGCAGCAGGCGCAAATGGACCTGGCCTACACCCATTACAAG
GATGGAGAGCCGGAACAGGCCATCGCCGCGGCCGACCGTTTCATCAAGCTGCACCCGACCCACCCCAATCTGGATTACAT
CTATTATCTGAAGGGTTTGGTGTATTTCAATGACGATTCCGGCCTGCTCGCCAAATGGGCCGGCCAGGACATGAGCGAGC
GCGACCCGCGCGCGGCGCGCGAAGCTTTCGCCGCGTTCCGCGAATTGACCACCCGCTTTCCCAACAGCACCTATACCGCC
GACGCCAGCGCCAAGATGATCAAGCTGGTGGACGCGCTGGGCGGCAACGAGATGCACGTGGCGCGCTACTACATGAAGCG
CGGCGCCTACCTGGCCGCCGCCAACCGCGCGCAGGGCGTGGTGAAGGATTACGCCAACACCAAGTATCCGGAAGAGGCGC
TGGCCATCATGGTGGCCGCCTACGACAAGCTGCAGCTGCCGCAGCTGCGCGACGACGCCCGCCGCGTGCTGGCGCTCAAC
TATCCGAAGAGCCAGTACCTGGCCAAGCCGTGGACGGTCGAGGAAATGCCGTGGTGGAAGCTGTGGAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(31-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R2IS89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

60.902

100

0.616
  comL Neisseria gonorrhoeae MS11

59.774

100

0.605