Detailed information    

insolico Bioinformatically predicted

Overview

Name   disA   Type   Machinery gene
Locus tag   AB5J54_RS17795 Genome accession   NZ_CP163444
Coordinates   3868394..3869452 (+) Length   352 a.a.
NCBI ID   WP_369149378.1    Uniprot ID   -
Organism   Streptomyces sp. R44     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3863394..3874452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J54_RS17780 (AB5J54_17780) - 3864032..3864829 (+) 798 WP_369149377.1 hypothetical protein -
  AB5J54_RS17785 (AB5J54_17785) - 3864826..3866595 (-) 1770 WP_369144886.1 hypothetical protein -
  AB5J54_RS17790 (AB5J54_17790) radA/sms 3866769..3868175 (+) 1407 WP_369144887.1 DNA repair protein RadA Machinery gene
  AB5J54_RS17795 (AB5J54_17795) disA 3868394..3869452 (+) 1059 WP_369149378.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  AB5J54_RS17800 (AB5J54_17800) - 3869482..3870321 (-) 840 WP_369144888.1 hypothetical protein -
  AB5J54_RS17805 (AB5J54_17805) - 3870546..3871229 (+) 684 WP_369144889.1 phosphatase PAP2 family protein -
  AB5J54_RS17810 (AB5J54_17810) - 3871263..3872189 (+) 927 WP_369144890.1 A/G-specific adenine glycosylase -
  AB5J54_RS17815 (AB5J54_17815) - 3872385..3872957 (+) 573 WP_369144891.1 SigE family RNA polymerase sigma factor -
  AB5J54_RS17820 (AB5J54_17820) - 3872999..3873691 (+) 693 WP_369144892.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38235.96 Da        Isoelectric Point: 5.2182

>NTDB_id=925620 AB5J54_RS17795 WP_369149378.1 3868394..3869452(+) (disA) [Streptomyces sp. R44]
MRAALSAVAPGTALRDGLERILRGNTGGLIVLGLDKAVDSMCTGGFELDVEFTATRLRELCKLDGALVLDKDITKIHRAG
VQLVPDASIPTEETGTRHRTADRVSKQCKFPVVSVSQSMRLIALYVGGERRVLEESAAILSRANQALATLERYKLRLDEV
AGTLSALEIEDLVTVRDVTAVAQRLEMVRRIATEIAEYVVELGTDGRLLSLQLDELIAGVEPERELVIRDYVPEPTAKRS
RTVAEALTDLNALTHTELLELPVVARALGYSGSPETLDSAVSPRGYRLLAKVPRLPGAIIERLVEHFGGLQKLLAASVDD
LQTVDGVGEARARSVREGLSRLAESSILERYV

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=925620 AB5J54_RS17795 WP_369149378.1 3868394..3869452(+) (disA) [Streptomyces sp. R44]
ATGCGCGCCGCCCTGAGCGCGGTCGCGCCGGGTACCGCGCTGCGCGACGGCCTGGAGCGGATCCTCAGGGGAAACACGGG
CGGTCTCATCGTGCTCGGCCTGGACAAAGCGGTCGACTCGATGTGCACCGGCGGCTTCGAGCTGGACGTCGAGTTCACCG
CCACGCGCCTGCGTGAGCTGTGCAAGCTCGACGGCGCGCTCGTCCTCGACAAGGACATCACCAAGATCCACCGCGCGGGT
GTGCAGCTGGTCCCGGACGCCTCCATCCCCACGGAGGAGACCGGCACCCGCCATCGCACCGCGGACCGGGTCTCCAAGCA
GTGCAAGTTCCCGGTCGTCTCCGTCTCGCAGTCGATGCGCCTGATCGCGCTGTACGTGGGCGGTGAGCGCCGCGTCCTGG
AGGAGTCGGCCGCGATCCTGTCCCGCGCCAACCAGGCGCTCGCGACCCTGGAGCGGTACAAGCTCCGGCTCGACGAGGTG
GCCGGCACGCTCTCCGCCCTGGAGATCGAGGACCTGGTCACGGTCCGGGACGTCACCGCGGTCGCGCAGCGCCTGGAGAT
GGTCCGCCGGATCGCCACCGAGATCGCCGAGTACGTGGTCGAGCTCGGCACCGACGGGCGACTGCTCTCGCTCCAGCTCG
ACGAGCTGATCGCGGGCGTGGAGCCGGAGCGCGAGCTGGTGATCCGGGACTACGTGCCGGAGCCGACGGCGAAGCGTTCG
CGGACGGTCGCCGAGGCGCTCACCGACCTGAACGCGCTCACCCACACCGAGCTGCTCGAACTTCCCGTGGTGGCGCGGGC
CCTCGGCTACAGCGGTTCGCCGGAGACCCTCGACTCGGCGGTCTCGCCGCGCGGCTACCGGCTCCTGGCGAAGGTGCCGC
GGCTGCCCGGCGCGATCATCGAGCGACTCGTGGAGCACTTCGGCGGGCTGCAGAAGCTCCTCGCGGCGAGCGTGGACGAC
CTGCAGACCGTCGACGGCGTCGGCGAGGCCCGGGCCCGCAGCGTCCGCGAGGGCCTGTCGCGGCTCGCGGAGTCCTCGAT
CCTGGAGCGGTACGTCTAG

Domains

Predicted by InterProScan.

DisA bacterial checkpoint controller nucleotide-binding (DAC)

(16-129)

DisA bacterial checkpoint controller linker region (DisA-linker)

(133-275)

Helix-hairpin-helix motif (HHH_2)

(302-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  disA Bacillus subtilis subsp. subtilis str. 168

45.429

99.432

0.452