Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   AB5J54_RS17790 Genome accession   NZ_CP163444
Coordinates   3866769..3868175 (+) Length   468 a.a.
NCBI ID   WP_369144887.1    Uniprot ID   -
Organism   Streptomyces sp. R44     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3861769..3873175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J54_RS17770 (AB5J54_17770) - 3861957..3862820 (-) 864 WP_369144884.1 sugar phosphate isomerase/epimerase family protein -
  AB5J54_RS17775 (AB5J54_17775) - 3862968..3863900 (-) 933 WP_369144885.1 Ppx/GppA family phosphatase -
  AB5J54_RS17780 (AB5J54_17780) - 3864032..3864829 (+) 798 WP_369149377.1 hypothetical protein -
  AB5J54_RS17785 (AB5J54_17785) - 3864826..3866595 (-) 1770 WP_369144886.1 hypothetical protein -
  AB5J54_RS17790 (AB5J54_17790) radA/sms 3866769..3868175 (+) 1407 WP_369144887.1 DNA repair protein RadA Machinery gene
  AB5J54_RS17795 (AB5J54_17795) disA 3868394..3869452 (+) 1059 WP_369149378.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  AB5J54_RS17800 (AB5J54_17800) - 3869482..3870321 (-) 840 WP_369144888.1 hypothetical protein -
  AB5J54_RS17805 (AB5J54_17805) - 3870546..3871229 (+) 684 WP_369144889.1 phosphatase PAP2 family protein -
  AB5J54_RS17810 (AB5J54_17810) - 3871263..3872189 (+) 927 WP_369144890.1 A/G-specific adenine glycosylase -
  AB5J54_RS17815 (AB5J54_17815) - 3872385..3872957 (+) 573 WP_369144891.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 49119.11 Da        Isoelectric Point: 7.7378

>NTDB_id=925619 AB5J54_RS17790 WP_369144887.1 3866769..3868175(+) (radA/sms) [Streptomyces sp. R44]
MAARTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAAGRVSTAAVPIGQVDGRQATARSTGVDEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKASSDEHRTLYVTGEESASQVRLRADRINALSDHLYLAAETDLSAVL
GHLDAVKPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDVAVPGTCLTVTLEGRRPLVAEVQSLTVDSQI
PSPRRTVSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPGKVPAGMTVTEVGDVGDALRVLPRSRRAKAPQETPGH

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=925619 AB5J54_RS17790 WP_369144887.1 3866769..3868175(+) (radA/sms) [Streptomyces sp. R44]
ATGGCTGCCCGTACGAAAACCGCCAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCCTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCCGTCCGGACCACCGCGGCGGGGC
GCGTCTCCACCGCCGCGGTTCCCATCGGCCAGGTCGACGGCCGGCAGGCGACCGCCCGGTCGACCGGCGTCGACGAGCTG
GACCGGGTCCTCGGCGGGGGCCTGGTGCCCGGCGCCGTCGTGCTGCTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACGCT
CCTGCTCGACGTGGCGGCCAAGGCGTCGAGCGACGAGCACCGCACGCTGTACGTCACGGGCGAGGAGTCCGCGAGCCAGG
TCCGGCTGCGCGCCGACCGGATCAACGCGCTCAGCGACCATCTGTACCTGGCGGCCGAGACCGATCTGTCCGCCGTCCTC
GGGCACCTCGACGCCGTGAAGCCCTCCCTGTTGATCATGGACTCGGTGCAGACCGTCGCCTCCCCCGAGATCGACGGCGC
GCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCGGGAGCCCTCATCCGGGCCTCCAAGGAGCGCGGCATGTCGACGCTCC
TCGTCGGCCACGTCACCAAGGACGGCGCCATCGCGGGCCCGCGGCTCCTGGAGCACCTGGTCGACGTCGTGCTGAGCTTC
GAGGGCGACCGGCACGCGCGGCTGCGCCTGGTCCGGGGCGTGAAGAACCGGTACGGGGCGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGGCTCGCCGACCCCTCCGGGCTCTTCCTGACCCGGCGCGACGTGGCCGTGCCCG
GCACCTGTCTGACGGTCACCCTGGAGGGCCGCCGTCCGCTCGTCGCCGAGGTGCAGTCGCTGACGGTGGACTCCCAGATC
CCCTCCCCGCGCCGGACGGTGTCGGGTCTGGAGACCTCCCGGGTCTCGATGATGCTGGCGGTCCTGGAGCAGCGCGGCCG
GATCAGCGCGCTGGGCAAGCGGGACATCTACAGCGCGACCGTCGGCGGGGTGAAGCTCACCGAGCCCGCAGCCGACCTGG
CGATCGCGCTCGCGCTGGCCTCCGCCGCGAGCGACACCCCGCTGCCGAAGAACCTGGTCGCGATCGGCGAGGTCGGGCTC
GCGGGCGAGGTGCGGCGGGTGACGGGGGTGCAGCGGCGGCTCGCCGAGGCGCACCGGCTCGGGTTCACGCACGCGCTGGT
GCCGGGCGATCCGGGGAAGGTGCCGGCGGGGATGACGGTGACGGAGGTGGGGGACGTGGGGGACGCGCTCCGGGTGTTGC
CGCGGAGCCGTCGGGCGAAGGCGCCTCAGGAGACGCCGGGCCACTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(82-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

96.795

0.425
  radA Streptococcus mitis SK321

43.692

91.453

0.4
  radA Streptococcus pneumoniae Rx1

43.692

91.453

0.4
  radA Streptococcus pneumoniae D39

43.692

91.453

0.4
  radA Streptococcus pneumoniae R6

43.692

91.453

0.4
  radA Streptococcus pneumoniae TIGR4

43.692

91.453

0.4
  radA Streptococcus mitis NCTC 12261

43.692

91.453

0.4