Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   AB5J53_RS34040 Genome accession   NZ_CP163443
Coordinates   7450728..7452941 (+) Length   737 a.a.
NCBI ID   WP_369249433.1    Uniprot ID   -
Organism   Streptomyces sp. R41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7445728..7457941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J53_RS34035 (AB5J53_34040) - 7448722..7450560 (-) 1839 WP_369249432.1 HSP90 family protein -
  AB5J53_RS34040 (AB5J53_34045) recG 7450728..7452941 (+) 2214 WP_369249433.1 ATP-dependent DNA helicase RecG Machinery gene
  AB5J53_RS34045 (AB5J53_34050) rsmD 7452960..7453733 (+) 774 WP_369249434.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AB5J53_RS34050 (AB5J53_34055) coaD 7453760..7454239 (+) 480 WP_369252632.1 pantetheine-phosphate adenylyltransferase -
  AB5J53_RS34055 (AB5J53_34060) - 7454339..7455409 (+) 1071 WP_369249435.1 ATP synthase F0 subunit B -
  AB5J53_RS34060 (AB5J53_34065) - 7455646..7456290 (+) 645 WP_369249436.1 DUF177 domain-containing protein -
  AB5J53_RS34065 (AB5J53_34070) rpmF 7456293..7456466 (+) 174 WP_028802425.1 50S ribosomal protein L32 -
  AB5J53_RS34070 (AB5J53_34075) rnc 7456486..7457343 (+) 858 WP_369249437.1 ribonuclease III -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 80025.57 Da        Isoelectric Point: 6.2561

>NTDB_id=925555 AB5J53_RS34040 WP_369249433.1 7450728..7452941(+) (recG) [Streptomyces sp. R41]
MDLVPVLEEPLKKVLGPATAKVMAEHLGLHTVGDLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHTFASSRA
PRGKGQRLEVTITDGSGRLQLVFFGNGVHKPHKDLLPGTRAMFSGKVSVFNHRLQLAHPAYELLRGDSDDAAETVDSWAG
ALIPIYPATAKLESWKIAKSVQTVLPSAQEAVDPLPDSLRDGRGLVALPEALLKIHRPHTKADIHDARARLKWDEAFVLQ
VALARRRHADAQLPAVARKPTPDGLLTAFDAKLPFTLTEGQQKVSKEIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLA
VVDAGGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGAEHSTKVVLLTGSMGAAARRQALLDLVTGEAGIVIGTHAL
IEDKVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVP
AADKPHFLARAWERVREEVENGHQAYVVCPRIGDEEDDPKKTKKKSPEDEAEKRPPLAVLDVADQLTKGPLQGLKVEVLH
GRMQPDDKDAVMRRFAAGETDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAAGLCLLVSEMPEAS
AARQRLNAVASTLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLAVIDDEEIIAEAREEAAAVVAADPELERLPGLRT
ALQALLDEEREQYLDKG

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=925555 AB5J53_RS34040 WP_369249433.1 7450728..7452941(+) (recG) [Streptomyces sp. R41]
ATGGATCTCGTGCCCGTGCTCGAAGAACCACTGAAGAAGGTGCTCGGTCCCGCCACCGCGAAGGTGATGGCCGAGCACCT
CGGCCTGCACACCGTCGGCGATCTGCTGCACCACTATCCGCGCAGATATGAGGAGCGCGGGCAGCTCACCCACCTCGCCG
ACCTGCCCATGGACGAGCATGTGACGGTGGTCGCCCAGGTCGCCGACGCGCGCCTGCACACCTTCGCCTCGTCCAGGGCT
CCCCGCGGCAAGGGTCAGCGCCTCGAAGTGACCATCACGGACGGCAGCGGCCGCCTCCAGCTGGTCTTCTTCGGCAACGG
CGTGCACAAGCCCCACAAGGACCTCCTGCCCGGCACGCGCGCGATGTTCTCGGGCAAGGTCTCCGTCTTCAACCACCGCC
TCCAGCTGGCCCATCCGGCGTACGAGCTGCTGCGCGGCGACAGCGACGACGCCGCCGAGACCGTCGACTCCTGGGCGGGC
GCGCTCATCCCGATCTACCCGGCCACCGCCAAGCTGGAGTCCTGGAAGATCGCCAAGTCCGTGCAGACGGTGCTGCCCAG
CGCCCAGGAGGCCGTCGACCCCCTCCCGGACTCCCTCCGGGACGGCCGCGGCCTGGTCGCCCTCCCCGAAGCCCTCCTGA
AGATCCACCGTCCGCACACCAAGGCGGACATCCACGACGCCCGTGCCCGCCTGAAGTGGGACGAGGCCTTCGTCCTCCAG
GTCGCCCTGGCCCGCCGCCGCCATGCCGACGCGCAACTCCCGGCCGTGGCCCGCAAACCCACGCCGGACGGCCTGCTCAC
CGCCTTCGACGCCAAGCTGCCCTTCACCCTCACCGAGGGCCAGCAGAAGGTCTCCAAGGAGATCTTCGACGACCTCGCGA
CCGAGCATCCGATGCACCGGCTGCTCCAGGGCGAGGTCGGAAGCGGCAAGACGATGGTGGCCCTGCGCGCCATGCTCGCC
GTCGTCGACGCCGGAGGCCAGGCCGCGATGCTCGCGCCCACCGAAGTGCTCGCCCAGCAGCACCACCGGTCGATCACGGA
AATGATGGGGGAGTTGGCCGAGGGCGGCATGCTCGGCGGGGCCGAGCACTCCACCAAGGTCGTGCTGCTCACGGGCTCCA
TGGGCGCGGCGGCCCGGAGGCAGGCGCTGCTCGATCTGGTCACCGGCGAGGCCGGGATCGTCATCGGCACGCATGCGCTG
ATCGAGGACAAGGTGCAGTTCCACGACCTGGGCCTGGTCGTGGTCGACGAGCAGCACCGCTTCGGTGTCGAGCAGCGCGA
CGCCCTGCGCGGCAAGGGCAAGCAGCCCCCGCACCTCCTGGTCATGACCGCCACGCCCATTCCGCGCACGGTCGCGATGA
CCGTCTTCGGCGACCTGGAGACCTCCGTCCTCGACCAGCTCCCCGCCGGCCGCTCGCCGATCGCCAGCCATGTCGTCCCG
GCCGCGGACAAGCCCCACTTCCTCGCGCGCGCGTGGGAGCGCGTGCGTGAGGAAGTGGAGAACGGCCATCAGGCGTACGT
GGTCTGCCCCCGTATCGGGGACGAGGAGGACGACCCCAAGAAGACCAAGAAGAAGTCCCCCGAGGACGAGGCGGAGAAGC
GCCCGCCGCTCGCCGTCCTCGACGTCGCCGACCAGCTCACCAAGGGCCCCCTCCAGGGCCTCAAGGTCGAGGTCCTGCAC
GGCCGTATGCAGCCCGACGACAAGGACGCCGTCATGCGCCGTTTCGCCGCGGGCGAGACCGACGTCCTGGTCGCGACCAC
CGTCATCGAGGTCGGGGTGAATGTGCCGAATGCCACAGCGATGGTGATCATGGACGCCGACCGGTTCGGCGTCTCCCAGC
TCCACCAGCTGCGCGGACGGGTCGGCCGAGGCTCGGCCGCCGGACTCTGCCTCCTGGTCAGCGAGATGCCCGAGGCCAGC
GCGGCCCGCCAGCGGCTGAACGCGGTGGCGTCCACGCTCGACGGCTTCGAGCTCTCCCGAATCGACCTGGAACAGCGCCG
CGAGGGCGACGTCCTCGGCCAGGCCCAGTCCGGCGTCCGCTCCTCGCTGCGCATGCTCGCCGTCATCGACGACGAGGAGA
TCATCGCCGAGGCCCGCGAGGAGGCCGCTGCGGTGGTGGCCGCCGACCCGGAGCTCGAGCGGCTCCCGGGACTGCGCACG
GCTCTCCAGGCCCTGCTCGACGAGGAGAGGGAGCAGTACCTGGACAAGGGGTGA

Domains

Predicted by InterProScan.

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-144)

DEAD/DEAH box helicase (DEAD)

(298-451)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(652-713)

Helicase conserved C-terminal domain (Helicase_C)

(548-624)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.395

94.708

0.364
  recG/mmsA Streptococcus pneumoniae R6

37.187

97.422

0.362
  recG/mmsA Streptococcus pneumoniae R36A

37.187

97.422

0.362